Detailed information of deep learning profile BP000023.1

  1. Home
  2. Deep Learning Profile > BP000023.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000023.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BIE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.06 0.04 0.12 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5203 4762 4460 5885 6904 5471 4474 5082 4454 4852 5414 5512 5351 5715 5137 3762 5119 5909 2683 1298 12723 2110 3735 16769 435 7111 2179 549 979 4190 7794 2419 3745 7189 3924 6107 4705 5874 4981 4950 5552 6376 5126 5604 5893 5901 5709 5724 5454 5655 ]
C [ 5434 4559 5865 6596 5262 4977 4564 5801 8193 7472 6744 6354 6083 5546 6157 7474 5115 3191 15917 20062 1949 10749 8567 621 126 197 872 204 1722 14648 2326 11161 7346 5605 4919 4646 4746 5815 6763 7991 6606 5243 5950 5594 5296 5528 5650 5525 5764 5736 ]
G [ 5828 7194 7106 4835 5401 5469 5537 5372 4380 4663 5194 5433 5457 4978 5647 3973 7037 9232 2156 703 3423 8612 2572 3017 21683 14883 12677 21329 17763 1419 10621 5813 2731 6501 6076 5171 8874 6055 6237 4389 4575 6051 6192 6098 6151 5675 5576 6266 6351 5997 ]
T [ 6101 6051 5135 5250 4999 6649 7991 6311 5539 5579 5214 5267 5675 6327 5625 7357 5295 4234 1810 503 4471 1095 7692 2158 322 375 6838 484 2102 2309 1825 3173 8744 3271 7647 6642 4241 4822 4585 5236 5833 4896 5298 5270 5226 5462 5631 5051 4997 5178 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.01 -0.01 0.07 -0.03 0.03 -0.04 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.01 0.08 0.13 -0.01 0.08 0.04 -0.01 -0.02 -0.04 -0.00 -0.03 -0.02 0.09 -0.01 0.05 0.03 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.02 0.13 0.09 0.08 0.12 0.09 -0.01 0.09 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.00 0.01 -0.00 -0.01 -0.02 -0.06 -0.01 -0.04 0.05 -0.01 -0.03 -0.05 0.02 -0.02 0.01 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages