Detailed information of deep learning profile BP000023.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000023.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BIE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.12 0.04 0.06 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5178 4997 5051 5631 5462 5226 5270 5298 4896 5833 5236 4585 4822 4241 6642 7647 3271 8744 3173 1825 2309 2102 484 6838 375 322 2158 7692 1095 4471 503 1810 4234 5295 7357 5625 6327 5675 5267 5214 5579 5539 6311 7991 6649 4999 5250 5135 6051 6101 ]
C [ 5997 6351 6266 5576 5675 6151 6098 6192 6051 4575 4389 6237 6055 8874 5171 6076 6501 2731 5813 10621 1419 17763 21329 12677 14883 21683 3017 2572 8612 3423 703 2156 9232 7037 3973 5647 4978 5457 5433 5194 4663 4380 5372 5537 5469 5401 4835 7106 7194 5828 ]
G [ 5736 5764 5525 5650 5528 5296 5594 5950 5243 6606 7991 6763 5815 4746 4646 4919 5605 7346 11161 2326 14648 1722 204 872 197 126 621 8567 10749 1949 20062 15917 3191 5115 7474 6157 5546 6083 6354 6744 7472 8193 5801 4564 4977 5262 6596 5865 4559 5434 ]
T [ 5655 5454 5724 5709 5901 5893 5604 5126 6376 5552 4950 4981 5874 4705 6107 3924 7189 3745 2419 7794 4190 979 549 2179 7111 435 16769 3735 2110 12723 1298 2683 5909 5119 3762 5137 5715 5351 5512 5414 4852 4454 5082 4474 5471 6904 5885 4460 4762 5203 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.01 -0.02 0.02 -0.05 -0.03 -0.01 0.05 -0.04 -0.01 -0.06 -0.02 -0.01 -0.00 0.01 0.00 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.09 -0.01 0.09 0.12 0.08 0.09 0.13 0.02 -0.01 0.04 0.05 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.03 0.05 -0.01 0.09 -0.02 -0.03 -0.00 -0.04 -0.02 -0.01 0.04 0.08 -0.01 0.13 0.08 -0.01 0.02 0.03 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.04 0.03 -0.03 0.07 -0.01 -0.01 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages