Detailed information of deep learning profile BP000021.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000021.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BHV
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.16 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5248 5337 5243 4975 5072 5792 5613 5404 5447 5423 4929 5749 5593 4440 4780 4251 6657 7754 2848 9290 2648 1521 2100 1904 355 7195 285 234 1795 8099 984 3790 401 1738 4318 5394 7749 5836 6368 5698 5244 5253 5836 5587 6549 8637 6832 4817 5362 5112 ]
C [ 5741 5563 5708 5937 5805 5170 5185 5756 5902 5939 5710 3936 3731 5802 5824 8947 4826 5673 6308 2231 5912 10427 987 18206 21100 12190 13587 21227 2422 2121 7960 3102 478 1929 8867 6856 3593 5347 4703 5071 5192 4844 4179 3875 5093 4944 5077 5189 4390 6916 ]
G [ 5566 5389 5447 5515 5301 5183 5106 5012 5077 5794 4729 6666 7846 6741 5693 4101 4088 4545 5212 7115 11221 1646 15186 1194 145 795 193 132 628 8036 11124 1611 20137 15803 2753 4789 7037 5755 5304 5649 5999 6458 7266 8192 5297 4036 4564 4736 6380 5554 ]
T [ 5447 5713 5604 5575 5824 5857 6098 5830 5576 4846 6634 5651 4832 5019 5705 4703 6431 4030 7634 3366 2221 8408 3729 698 402 1822 7937 409 17157 3746 1934 13499 986 2532 6064 4963 3623 5064 5627 5584 5567 5447 4721 4348 5063 4385 5529 7260 5870 4420 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.05 -0.06 -0.02 -0.07 -0.04 -0.02 -0.00 0.02 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.13 0.17 0.11 0.12 0.18 0.03 -0.00 0.05 0.07 -0.03 -0.02 0.05 0.04 -0.00 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.04 0.07 -0.02 0.14 -0.03 -0.03 -0.00 -0.06 -0.03 0.00 0.05 0.12 -0.02 0.17 0.11 -0.01 0.03 0.05 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.07 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages