Detailed information of deep learning profile BP000021.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000021.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BHV
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.16 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4420 5870 7260 5529 4385 5063 4348 4721 5447 5567 5584 5627 5064 3623 4963 6064 2532 986 13499 1934 3746 17157 409 7937 1822 402 698 3729 8408 2221 3366 7634 4030 6431 4703 5705 5019 4832 5651 6634 4846 5576 5830 6098 5857 5824 5575 5604 5713 5447 ]
C [ 5554 6380 4736 4564 4036 5297 8192 7266 6458 5999 5649 5304 5755 7037 4789 2753 15803 20137 1611 11124 8036 628 132 193 795 145 1194 15186 1646 11221 7115 5212 4545 4088 4101 5693 6741 7846 6666 4729 5794 5077 5012 5106 5183 5301 5515 5447 5389 5566 ]
G [ 6916 4390 5189 5077 4944 5093 3875 4179 4844 5192 5071 4703 5347 3593 6856 8867 1929 478 3102 7960 2121 2422 21227 13587 12190 21100 18206 987 10427 5912 2231 6308 5673 4826 8947 5824 5802 3731 3936 5710 5939 5902 5756 5185 5170 5805 5937 5708 5563 5741 ]
T [ 5112 5362 4817 6832 8637 6549 5587 5836 5253 5244 5698 6368 5836 7749 5394 4318 1738 401 3790 984 8099 1795 234 285 7195 355 1904 2100 1521 2648 9290 2848 7754 6657 4251 4780 4440 5593 5749 4929 5423 5447 5404 5613 5792 5072 4975 5243 5337 5248 ]

Hypothetical CWM

   
A [ -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.07 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.05 0.03 -0.01 0.11 0.17 -0.02 0.12 0.05 0.00 -0.03 -0.06 -0.00 -0.03 -0.03 0.14 -0.02 0.07 0.04 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.02 -0.00 0.04 0.05 -0.02 -0.03 0.07 0.05 -0.00 0.03 0.18 0.12 0.11 0.17 0.13 -0.02 0.13 0.04 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.01 0.02 -0.00 -0.02 -0.04 -0.07 -0.02 -0.06 0.05 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages