Detailed information of deep learning profile BP000003.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000003.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AKO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4196 3877 3669 5080 6078 4720 3710 4315 3624 3939 4552 4727 4613 4831 4250 3030 4201 5004 2160 1000 10670 1752 3144 14229 384 5956 2002 370 908 3548 6409 2170 3163 6038 3426 5176 4006 4804 4358 4102 4814 5496 4201 4774 4922 4976 4852 4788 4647 4730 ]
C [ 4604 3622 4896 5649 4174 4035 3575 4739 7303 6557 5703 5346 5102 4598 5244 6277 4457 2565 13786 17115 1671 9215 7159 634 118 202 769 176 1686 12033 2039 9157 5956 4670 4056 3911 4008 4973 5697 6564 5557 4244 4986 4603 4562 4611 4838 4701 4932 4779 ]
G [ 4889 6239 6122 3824 4725 4585 4431 4480 3455 3653 4302 4531 4524 4167 4716 3223 5956 7627 1643 474 3052 7091 2076 2362 18221 12422 10784 18128 14605 1390 9019 5050 2422 5588 5023 4362 7401 5096 5095 3613 3879 5114 5237 5135 5052 4686 4610 5087 5192 5007 ]
T [ 5271 5222 4273 4407 3983 5620 7244 5426 4578 4811 4403 4356 4721 5364 4750 6430 4346 3764 1371 371 3567 902 6581 1735 237 380 5405 286 1761 1989 1493 2583 7419 2664 6455 5511 3545 4087 3810 4681 4710 4106 4536 4448 4424 4687 4660 4384 4189 4444 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.03 -0.02 0.02 -0.02 -0.04 0.03 -0.03 -0.02 0.09 -0.06 0.04 -0.06 -0.06 -0.06 -0.02 0.01 -0.03 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.02 0.12 0.19 -0.03 0.11 0.05 -0.01 -0.03 -0.08 -0.01 -0.05 -0.03 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 0.06 -0.04 -0.03 0.07 0.05 -0.02 0.03 0.18 0.13 0.10 0.18 0.13 -0.02 0.13 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.10 -0.03 -0.06 0.06 -0.03 -0.06 -0.07 0.01 -0.05 -0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 582

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages