Detailed information of deep learning profile BP000003.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000003.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AKO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4444 4189 4384 4660 4687 4424 4448 4536 4106 4710 4681 3810 4087 3545 5511 6455 2664 7419 2583 1493 1989 1761 286 5405 380 237 1735 6581 902 3567 371 1371 3764 4346 6430 4750 5364 4721 4356 4403 4811 4578 5426 7244 5620 3983 4407 4273 5222 5271 ]
C [ 5007 5192 5087 4610 4686 5052 5135 5237 5114 3879 3613 5095 5096 7401 4362 5023 5588 2422 5050 9019 1390 14605 18128 10784 12422 18221 2362 2076 7091 3052 474 1643 7627 5956 3223 4716 4167 4524 4531 4302 3653 3455 4480 4431 4585 4725 3824 6122 6239 4889 ]
G [ 4779 4932 4701 4838 4611 4562 4603 4986 4244 5557 6564 5697 4973 4008 3911 4056 4670 5956 9157 2039 12033 1686 176 769 202 118 634 7159 9215 1671 17115 13786 2565 4457 6277 5244 4598 5102 5346 5703 6557 7303 4739 3575 4035 4174 5649 4896 3622 4604 ]
T [ 4730 4647 4788 4852 4976 4922 4774 4201 5496 4814 4102 4358 4804 4006 5176 3426 6038 3163 2170 6409 3548 908 370 2002 5956 384 14229 3144 1752 10670 1000 2160 5004 4201 3030 4250 4831 4613 4727 4552 3939 3624 4315 3710 4720 6078 5080 3669 3877 4196 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 -0.00 -0.05 0.01 -0.07 -0.06 -0.03 0.06 -0.06 -0.03 -0.10 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.13 0.18 0.10 0.13 0.18 0.03 -0.02 0.05 0.07 -0.03 -0.04 0.06 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.05 -0.01 -0.08 -0.03 -0.01 0.05 0.11 -0.03 0.19 0.12 -0.02 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.03 0.01 -0.02 -0.06 -0.06 -0.06 0.04 -0.06 0.09 -0.02 -0.03 0.03 -0.04 -0.02 0.02 -0.02 -0.03 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 582

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages