Detailed information of deep learning profile BP001110.1

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This page shows detailed deep learning-derived predictions and motifs for SP1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP1
Model ID: BP001110.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0079.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08047  
Source: ENCSR460YAM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 0.02 0.04 0.00 0.03 0.03 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 0.01 0.03 0.00 0.03 0.03 0.01 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 21 20 24 23 22 20 20 16 10 9 10 35 26 14 5 7 12 0 7 0 0 0 17 7 28 11 10 5 8 0 1 0 0 1 29 7 16 20 15 17 11 10 20 16 17 21 19 14 8 12 ]
C [ 59 48 46 63 60 60 67 61 62 75 71 38 31 2 102 108 127 139 0 139 139 121 103 77 21 8 90 116 129 139 0 139 138 115 90 69 54 49 64 60 70 63 54 61 68 61 64 63 58 60 ]
G [ 39 46 44 35 39 40 37 42 41 32 39 36 68 110 14 1 0 0 127 0 0 1 2 7 52 88 21 1 2 0 128 0 1 0 1 23 35 50 45 38 40 53 46 41 35 37 40 42 52 43 ]
T [ 20 25 25 18 18 19 15 20 26 23 19 30 14 13 18 23 0 0 5 0 0 17 17 48 38 32 18 17 0 0 10 0 0 23 19 40 34 20 15 24 18 13 19 21 19 20 16 20 21 24 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 -0.02 -0.01 -0.02 -0.02 -0.02 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.02 -0.01 -0.02 -0.02 -0.01 0.01 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 0.01 0.01 0.02 0.04 -0.01 0.03 0.03 0.02 0.01 0.01 0.00 -0.01 0.01 0.01 0.01 0.03 -0.01 0.03 0.03 0.02 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.02 0.01 -0.01 -0.01 -0.01 0.03 -0.01 -0.00 -0.02 -0.01 0.00 0.01 0.02 0.01 -0.00 -0.00 -0.01 0.03 -0.01 -0.01 -0.02 -0.01 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.02 -0.02 -0.01 -0.01 -0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.01 -0.02 -0.01 -0.01 -0.01 -0.02 0.01 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5373

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 225

CWM

PFM

     

HCWM

7 profiles found for the same TF (SP1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001106.1 SP1 ENCSR000BHK GM12878 Homo sapiens MA0079.5
BP001107.1 SP1 ENCSR000BIR H1 Homo sapiens MA0079.5
BP001108.1 SP1 ENCSR000BKO K562 Homo sapiens MA0079.5
BP001109.1 SP1 ENCSR372IML K562 Homo sapiens MA0079.5
BP001111.1 SP1 ENCSR583CGO WTC11 Homo sapiens MA0079.5
BP001112.1 SP1 ENCSR729LGA MCF-7 Homo sapiens MA0079.5
BP001113.1 SP1 ENCSR991ELG K562 Homo sapiens MA0079.5
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