JASPAR - SP1 - BP001106.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for SP1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	SP1
Model ID:	BP001106.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	Three-zinc finger Kruppel-related
JASPAR ID:	MA0079.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P08047
Source:	ENCSR000BHK
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 2068

Contribution weight matrix (CWM)

A [	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.01	0.01	0.01	0.03	0.00	0.02	0.02	0.01	0.01	0.01	0.00	]
G [	0.00	0.01	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	329	359	372	394	391	387	357	362	315	328	359	362	338	316	325	289	323	305	296	285	263	281	724	540	170	89	88	219	6	49	9	31	93	391	139	332	326	331	246	230	237	295	353	339	322	304	349	338	372	356	]
C [	716	707	751	743	732	685	715	699	733	744	743	769	773	751	801	912	879	874	910	910	920	872	599	333	119	1477	1568	1799	2051	38	2003	1992	1798	1474	1274	548	818	890	890	794	718	823	790	807	794	736	721	760	747	729	]
G [	656	594	571	546	582	610	611	622	652	615	608	595	598	624	598	565	517	596	584	520	477	539	270	1039	1638	123	51	33	3	1948	23	25	25	49	231	396	560	588	612	736	767	580	582	607	607	660	623	588	578	598	]
T [	367	408	374	385	363	386	385	385	368	381	358	342	359	377	344	302	349	293	278	353	408	376	475	156	141	379	361	17	8	33	33	20	152	154	424	792	364	259	320	308	346	370	343	315	345	368	375	382	371	385	]

Hypothetical CWM

A [	0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.01	-0.01	-0.01	-0.01	-0.00	0.00	-0.00	-0.00	0.00	]
C [	0.00	0.01	0.00	-0.00	0.01	0.01	0.01	0.03	0.00	0.02	0.02	0.01	0.01	0.01	0.00	0.00	]
G [	0.00	0.00	0.01	0.01	0.00	0.00	0.00	-0.00	0.02	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	0.00	-0.00	-0.00	0.00	0.00	-0.01	-0.01	-0.01	-0.01	-0.01	-0.00	-0.00	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4678

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1039

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 839

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 273

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 209

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 103

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 50

CWM

PFM

HCWM

7 profiles found for the same TF (SP1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001107.1	SP1	ENCSR000BIR	H1	Homo sapiens	MA0079.5
BP001108.1	SP1	ENCSR000BKO	K562	Homo sapiens	MA0079.5
BP001109.1	SP1	ENCSR372IML	K562	Homo sapiens	MA0079.5
BP001110.1	SP1	ENCSR460YAM	HepG2	Homo sapiens	MA0079.5
BP001111.1	SP1	ENCSR583CGO	WTC11	Homo sapiens	MA0079.5
BP001112.1	SP1	ENCSR729LGA	MCF-7	Homo sapiens	MA0079.5
BP001113.1	SP1	ENCSR991ELG	K562	Homo sapiens	MA0079.5