JASPAR - BHLHE40 - BP000972.1

This page shows detailed deep learning-derived predictions and motifs for BHLHE40 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	BHLHE40
Model ID:	BP000972.1
Cell line/tissue:	GM12878
Class:	Basic helix-loop-helix factors (bHLH)
Family:	Hairy-related factors
JASPAR ID:	MA0464.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	O14503
Source:	ENCSR000DZJ
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 9253

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.00	0.00	0.03	0.00	0.00	-0.00	0.00	0.01	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.00	0.00	-0.00	0.07	-0.00	0.10	-0.00	0.00	0.00	0.02	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.10	-0.00	0.09	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	0.00	0.06	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	2107	2084	2184	2049	1953	2175	1903	2145	1891	2118	1947	2056	2043	2056	1837	2142	1872	2451	1759	2463	1524	6330	0	44	19	6	3369	1873	1720	1951	1784	2098	1904	1902	1818	1963	1892	2126	1857	1945	1909	2098	2099	1907	1910	2052	1914	1957	2121	1990	]
C [	2633	2579	2590	2594	2693	2637	2634	2571	2834	2528	2688	2797	2755	2745	2866	2694	2844	2388	2484	1545	7599	891	9203	6	26	5	5251	3471	2628	2604	2852	2585	2835	2618	2770	2710	2804	2682	2854	2752	2651	2544	2686	2586	2778	2520	2634	2604	2578	2622	]
G [	2596	2700	2537	2659	2521	2570	2727	2769	2586	2744	2680	2702	2601	2638	2578	2683	2701	2709	3871	2169	65	1200	4	9201	13	9222	214	2249	2564	2911	2649	2765	2660	2842	2760	2609	2581	2613	2594	2592	2525	2697	2495	2630	2518	2570	2645	2760	2502	2624	]
T [	1917	1890	1942	1951	2086	1871	1989	1768	1942	1863	1938	1698	1854	1814	1972	1734	1836	1705	1139	3076	65	832	46	2	9195	20	419	1660	2341	1787	1968	1805	1854	1891	1905	1971	1976	1832	1948	1964	2168	1914	1973	2130	2047	2111	2060	1932	2052	2017	]

Hypothetical CWM

A [	0.00	0.00	0.01	-0.00	0.01	0.01	0.05	-0.06	0.01	-0.01	-0.04	0.03	-0.01	0.00	-0.00	0.00	]
C [	0.01	0.01	0.01	0.02	-0.03	0.08	-0.03	0.10	-0.02	0.03	-0.04	0.04	0.02	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.02	0.03	-0.04	0.03	-0.02	0.10	-0.03	0.09	-0.03	0.02	0.01	0.01	0.01	]
T [	0.00	-0.00	0.00	-0.01	0.03	-0.04	-0.01	0.01	-0.06	0.06	0.00	0.00	-0.00	0.01	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1621

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1546

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1267

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1061

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 650

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 549

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 431

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 429

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 229

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 91

CWM

PFM

HCWM

6 profiles found for the same TF (BHLHE40) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000970.1	BHLHE40	ENCSR000BID	HepG2	Homo sapiens	MA0464.3
BP000971.1	BHLHE40	ENCSR000DYJ	A549	Homo sapiens	MA0464.3
BP000973.1	BHLHE40	ENCSR000EDT	HepG2	Homo sapiens	MA0464.3
BP000974.1	BHLHE40	ENCSR000EGV	K562	Homo sapiens	MA0464.3
BP000975.1	BHLHE40	ENCSR957KYB	IMR-90	Homo sapiens	MA0464.3
BP000976.1	BHLHE40	ENCSR987MTA	GM12878	Homo sapiens	MA0464.3