Detailed information of deep learning profile BP000962.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000962.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR026GSW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.00 0.07 0.01 0.04 0.05 0.06 0.00 0.05 0.02 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2227 1848 1848 1757 1781 2228 1975 1750 2214 1965 1815 1665 1717 1825 1715 1672 2342 1747 1640 2056 1897 1443 1421 1468 42 44 821 13 5 1162 242 413 2765 1791 1663 2113 1674 1693 1728 1781 1880 1638 1821 1821 1763 2131 1960 1772 2240 1899 ]
C [ 2922 2924 3366 3434 3409 2922 2804 3362 2933 3297 2769 2943 2805 2893 2734 2713 2807 2780 2920 2991 2809 2079 1114 6325 41 38 5 6 40 7202 100 400 1941 1693 3576 3087 2978 2888 2858 2533 2921 2958 2832 2721 3081 2802 2747 2845 2761 2776 ]
G [ 3489 3435 3489 3441 3505 3370 3980 3561 3553 3496 3586 3445 3742 4106 4176 4429 3875 4474 4587 3835 4216 3897 7512 954 10275 5669 9512 10340 10313 48 9828 8134 4417 4865 3762 3486 4076 4131 4030 4529 4101 3964 4138 3864 3895 3814 3990 4091 3672 3892 ]
T [ 1725 2156 1660 1731 1668 1843 1604 1690 1663 1605 2193 2310 2099 1539 1738 1549 1339 1362 1216 1481 1441 2944 316 1616 5 4612 25 4 5 1951 193 1416 1240 2014 1362 1677 1635 1651 1747 1520 1461 1803 1572 1957 1624 1616 1666 1655 1690 1796 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.02 -0.03 0.00 -0.02 -0.03 -0.01 -0.01 -0.02 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 -0.00 0.04 -0.02 -0.01 -0.03 -0.01 -0.02 0.04 -0.02 -0.01 0.00 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.00 0.03 -0.01 0.07 0.02 0.05 0.05 0.06 -0.03 0.05 0.03 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.00 -0.01 0.01 -0.02 -0.01 -0.04 0.02 -0.02 -0.02 -0.02 0.00 -0.02 0.01 -0.00 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2594

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1395

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 757

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 606

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 506

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 292

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 46

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages