Detailed information of deep learning profile BP000961.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000961.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR024CNP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.02 0.05 0.00 0.08 0.06 0.05 0.01 0.07 -0.00 0.02 0.00 0.00 0.00 0.00 ]
G [ -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3637 3303 2986 3470 3001 4548 2939 4457 2853 3041 4219 3929 3222 3308 2473 6139 2432 3369 533 5751 9 24 57 11179 4 4261 776 6168 3218 3068 2400 3111 2763 3009 2946 3576 5425 5749 5387 3629 2971 3228 3020 3820 3280 3381 3558 5725 3315 3342 ]
C [ 5648 7952 7280 6539 6849 5778 7497 7050 7222 8505 6328 7138 6432 5931 7103 6809 6394 13434 16997 178 18537 18426 17434 7023 18512 3565 11413 6504 6212 5787 9254 8339 6172 8397 8427 7784 5763 5491 5968 5113 5703 5689 7932 5130 5550 5510 5472 5182 5349 5482 ]
G [ 3990 3861 3895 4017 5359 3919 4839 4046 3745 3598 4062 4328 5781 3870 5787 2439 3206 858 338 9714 13 72 41 251 12 7837 2062 2826 5213 5557 3659 3851 3731 4016 3722 3855 3983 3986 3843 6127 4126 6250 3891 4001 6254 6115 6229 4164 4106 4225 ]
T [ 5287 3446 4401 4536 3353 4317 3286 3009 4742 3418 3953 3167 3127 5453 3199 3175 6530 901 694 2919 3 40 1030 109 34 2899 4311 3064 3919 4150 3249 3261 5896 3140 3467 3347 3391 3336 3364 3693 5762 3395 3719 5611 3478 3556 3303 3491 5792 5513 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.01 -0.02 0.01 -0.02 -0.03 -0.03 0.03 -0.04 0.00 -0.02 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.02 0.05 -0.02 0.08 0.06 0.05 0.03 0.07 -0.00 0.03 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.00 0.00 0.00 -0.00 -0.01 0.04 -0.03 0.00 -0.02 -0.00 -0.02 0.04 -0.00 0.01 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 -0.02 -0.03 0.01 -0.04 -0.01 -0.01 0.00 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2286

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1673

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 70

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages