Detailed information of deep learning profile BP000961.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000961.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR024CNP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 -0.00 0.07 0.01 0.05 0.06 0.08 0.00 0.05 0.02 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5513 5792 3491 3303 3556 3478 5611 3719 3395 5762 3693 3364 3336 3391 3347 3467 3140 5896 3261 3249 4150 3919 3064 4311 2899 34 109 1030 40 3 2919 694 901 6530 3175 3199 5453 3127 3167 3953 3418 4742 3009 3286 4317 3353 4536 4401 3446 5287 ]
C [ 4225 4106 4164 6229 6115 6254 4001 3891 6250 4126 6127 3843 3986 3983 3855 3722 4016 3731 3851 3659 5557 5213 2826 2062 7837 12 251 41 72 13 9714 338 858 3206 2439 5787 3870 5781 4328 4062 3598 3745 4046 4839 3919 5359 4017 3895 3861 3990 ]
G [ 5482 5349 5182 5472 5510 5550 5130 7932 5689 5703 5113 5968 5491 5763 7784 8427 8397 6172 8339 9254 5787 6212 6504 11413 3565 18512 7023 17434 18426 18537 178 16997 13434 6394 6809 7103 5931 6432 7138 6328 8505 7222 7050 7497 5778 6849 6539 7280 7952 5648 ]
T [ 3342 3315 5725 3558 3381 3280 3820 3020 3228 2971 3629 5387 5749 5425 3576 2946 3009 2763 3111 2400 3068 3218 6168 776 4261 4 11179 57 24 9 5751 533 3369 2432 6139 2473 3308 3222 3929 4219 3041 2853 4457 2939 4548 3001 3470 2986 3303 3637 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.00 -0.01 -0.01 -0.04 0.01 -0.03 -0.02 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.01 -0.00 0.04 -0.02 -0.00 -0.02 0.00 -0.03 0.04 -0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.03 -0.00 0.07 0.03 0.05 0.06 0.08 -0.02 0.05 0.02 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.02 0.00 -0.04 0.03 -0.03 -0.03 -0.02 0.01 -0.02 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2286

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1673

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 70

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages