Detailed information of deep learning profile BP000959.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000959.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BSQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.02 -0.00 0.06 0.00 0.04 0.04 0.06 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1622 1756 1674 1582 1539 1619 1541 1702 1569 1715 1506 1566 2000 1950 1387 954 1156 6 50 885 22 4 1119 359 566 2306 1993 1675 1673 1650 1554 1486 1649 1516 1606 1573 1540 1580 1727 1649 1545 1749 1676 1607 1621 1656 1699 1745 1605 1683 ]
C [ 2871 2840 2983 2756 2945 2729 2762 2748 2721 2854 2745 2782 2478 2580 2146 1080 6458 9 169 41 36 11 6549 175 609 2283 1872 2772 2930 2588 2534 2744 2550 2810 2774 2761 2652 2869 2766 2725 2927 2760 2787 2828 2695 2877 2852 2727 2788 2842 ]
G [ 3552 3490 3400 3632 3502 3688 3809 3646 3959 3796 4025 3983 3702 3954 3208 7314 497 9588 4603 8626 9539 9589 26 8846 7054 3825 4220 3989 3597 3996 4177 3883 4036 3997 3742 3825 3776 3674 3582 3749 3554 3569 3531 3503 3577 3496 3441 3567 3595 3489 ]
T [ 1562 1521 1550 1637 1621 1571 1495 1511 1358 1242 1331 1276 1427 1123 2866 259 1496 4 4785 55 10 3 1913 227 1378 1193 1522 1171 1407 1373 1342 1494 1372 1284 1485 1448 1639 1484 1532 1484 1581 1529 1613 1669 1714 1578 1615 1568 1619 1593 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.00 -0.01 -0.02 -0.04 0.01 -0.03 -0.03 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 0.01 -0.00 0.04 -0.02 -0.00 -0.02 -0.00 -0.02 0.04 -0.01 -0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.03 -0.02 0.06 0.02 0.04 0.04 0.06 -0.03 0.04 0.02 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.03 -0.00 -0.04 0.03 -0.03 -0.03 -0.03 0.01 -0.02 0.01 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 818

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages