Detailed information of deep learning profile BP000957.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000957.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BRG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 78 69 80 82 84 73 69 106 78 90 66 73 85 75 80 68 73 72 69 50 67 95 76 39 40 159 0 0 5 101 96 60 8 9 19 102 104 76 68 64 50 68 70 67 68 69 69 64 83 73 ]
C [ 157 160 174 166 164 175 157 157 166 173 159 160 175 166 161 171 145 158 180 185 200 120 197 121 91 69 472 0 149 138 115 80 438 6 194 131 140 139 209 113 150 147 145 155 135 152 153 157 136 150 ]
G [ 163 172 140 167 146 155 161 158 152 143 164 152 143 162 149 162 170 173 161 181 120 206 136 155 129 240 0 472 66 184 221 304 5 446 170 167 173 178 120 221 201 170 191 162 196 165 186 175 175 179 ]
T [ 74 71 78 57 78 69 85 51 76 66 83 87 69 69 82 71 84 69 62 56 85 51 63 157 212 4 0 0 252 49 40 28 21 11 89 72 55 79 75 74 71 87 66 88 73 86 64 76 78 70 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 -0.01 0.01 -0.01 -0.02 -0.02 -0.00 -0.01 -0.00 -0.02 -0.01 -0.01 -0.00 -0.00 -0.01 ]
C [ -0.00 0.00 -0.00 -0.00 -0.01 0.03 -0.02 0.00 -0.00 -0.00 -0.01 0.02 -0.02 0.00 -0.00 -0.00 -0.00 ]
G [ 0.00 -0.00 0.00 -0.01 0.00 -0.02 0.03 -0.01 -0.00 -0.00 0.01 -0.01 0.02 -0.00 -0.00 -0.00 0.00 ]
T [ -0.01 -0.01 -0.00 0.00 -0.02 -0.02 -0.01 0.01 -0.01 -0.01 -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 70

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages