Detailed information of deep learning profile BP000957.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000957.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BRG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 70 78 76 64 86 73 88 66 87 71 74 75 79 55 72 89 11 21 28 40 49 252 0 0 4 212 157 63 51 85 56 62 69 84 71 82 69 69 87 83 66 76 51 85 69 78 57 78 71 74 ]
C [ 179 175 175 186 165 196 162 191 170 201 221 120 178 173 167 170 446 5 304 221 184 66 472 0 240 129 155 136 206 120 181 161 173 170 162 149 162 143 152 164 143 152 158 161 155 146 167 140 172 163 ]
G [ 150 136 157 153 152 135 155 145 147 150 113 209 139 140 131 194 6 438 80 115 138 149 0 472 69 91 121 197 120 200 185 180 158 145 171 161 166 175 160 159 173 166 157 157 175 164 166 174 160 157 ]
T [ 73 83 64 69 69 68 67 70 68 50 64 68 76 104 102 19 9 8 60 96 101 5 0 0 159 40 39 76 95 67 50 69 72 73 68 80 75 85 73 66 90 78 106 69 73 84 82 80 69 78 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.02 -0.02 0.00 -0.00 -0.01 -0.01 ]
C [ 0.00 -0.00 -0.00 -0.00 0.02 -0.01 0.01 -0.00 -0.00 -0.01 0.03 -0.02 0.00 -0.01 0.00 -0.00 0.00 ]
G [ -0.00 -0.00 -0.00 0.00 -0.02 0.02 -0.01 -0.00 -0.00 0.00 -0.02 0.03 -0.01 -0.00 -0.00 0.00 -0.00 ]
T [ -0.01 -0.00 -0.00 -0.01 -0.01 -0.02 -0.00 -0.01 -0.00 -0.02 -0.02 -0.01 0.01 -0.01 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 70

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages