Detailed information of deep learning profile BP000955.1

  1. Home
  2. Deep Learning Profile > BP000955.1
This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000955.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 0.00 0.06 0.04 0.04 0.01 0.05 0.00 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2209 2083 2221 2085 2057 2043 2176 2013 2164 1886 1943 1879 1857 1926 1929 1534 1929 1591 1708 282 2878 2 12 37 5137 4 2133 455 3538 1536 1789 1553 1729 1702 1936 2010 2174 2023 2118 2008 2145 2006 2201 2128 2162 2109 2123 2054 2286 2029 ]
C [ 4936 5099 4940 5161 5033 5181 5238 5323 5102 5550 5534 5451 5992 5724 4979 5574 6558 5937 9747 12226 62 13048 13012 12269 7688 13045 818 9535 4916 5736 5351 5703 5708 5559 5456 5168 5163 5200 4978 5239 4932 5022 4822 5084 4752 4887 4775 4862 4717 4812 ]
G [ 3663 3614 3687 3635 3611 3651 3512 3557 3707 3599 3415 3627 3110 3142 3929 3665 2253 2812 935 170 8491 4 4 4 160 1 8064 1750 2824 3143 3347 3712 3583 3577 3611 3573 3487 3580 3721 3551 3752 3669 3721 3572 3780 3818 3866 3847 3824 3877 ]
T [ 2251 2263 2211 2178 2358 2184 2133 2166 2086 2024 2167 2102 2100 2267 2222 2286 2319 2719 669 381 1628 5 31 749 74 9 2044 1319 1781 2644 2572 2091 2039 2221 2056 2308 2235 2256 2242 2261 2230 2362 2315 2275 2365 2245 2295 2296 2232 2341 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 -0.01 0.01 -0.02 -0.02 -0.02 0.02 -0.03 0.00 -0.02 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.04 -0.01 0.06 0.04 0.04 0.02 0.05 -0.01 0.02 0.00 0.01 0.00 0.01 ]
G [ 0.00 0.00 0.00 -0.00 -0.01 0.03 -0.02 -0.01 -0.02 -0.00 -0.02 0.03 -0.00 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 0.00 -0.01 -0.01 -0.01 -0.03 -0.03 0.00 -0.03 -0.02 -0.01 -0.00 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1752

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 185

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 30

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages