Detailed information of deep learning profile BP000872.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000872.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR490AMH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.06 0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.05 0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.00 0.05 0.00 0.07 0.05 0.05 -0.00 0.00 0.00 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 2869 2813 3046 3619 3047 3072 2835 2967 2759 3034 2895 3102 3064 3104 2759 2407 1992 2651 2567 340 28 22 35 35 11973 328 5037 1059 5896 3100 1933 2778 3753 3577 2722 3142 3069 3219 3162 3304 3325 2979 3428 3673 3080 3038 2879 3023 3104 2941 ]
C [ 2627 3201 2585 2681 2724 3431 2495 2494 3588 3413 3273 2754 2716 3466 2662 2774 4528 2656 2852 60 1 6 5 8 3 10425 2308 3629 486 2107 3200 3292 2711 2600 2516 3034 3157 2564 2809 2559 2471 3387 2905 2600 2804 2793 2666 3228 2778 2570 ]
G [ 2594 2667 3280 2602 3135 2438 2569 2483 2611 2442 2554 3045 3234 2404 3045 3658 2496 2076 2199 41 11975 6 944 2877 18 44 114 1273 831 4335 3469 3373 2703 2731 3291 2757 2714 2586 2947 3016 3159 2531 2521 2597 2592 3198 3137 2579 2990 3199 ]
T [ 3919 3328 3098 3107 3103 3068 4110 4065 3051 3120 3287 3108 2995 3035 3543 3170 2993 4626 4391 11568 5 11975 11025 9089 15 1212 4550 6048 4796 2467 3407 2566 2842 3101 3480 3076 3069 3640 3091 3130 3054 3112 3155 3139 3533 2980 3327 3179 3137 3299 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.00 -0.01 0.04 -0.02 -0.02 -0.02 0.06 -0.00 0.02 -0.01 0.02 0.00 ]
C [ 0.02 0.02 0.01 0.01 -0.01 -0.03 -0.02 -0.06 -0.06 -0.04 0.06 0.01 0.02 -0.02 0.01 ]
G [ 0.02 0.02 0.01 0.01 -0.02 0.07 -0.03 0.03 0.03 0.04 -0.02 -0.01 -0.00 -0.00 0.02 ]
T [ -0.00 -0.00 0.00 0.01 0.05 -0.06 0.07 0.06 0.06 -0.03 0.01 0.01 0.02 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7674

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 7651

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 4273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 521

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 63

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 26

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000867.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens MA0047.4
BP000868.1 FOXA2 ENCSR000BRE A549 Homo sapiens MA0047.4
BP000869.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
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