JASPAR - FOXA2 - BP000871.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	FOXA2
Model ID:	BP000871.1
Cell line/tissue:	liver
Class:	Fork head/winged helix factors
Family:	FOX
JASPAR ID:	MA0047.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q9Y261
Source:	ENCSR310NYI
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 13429

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.01	0.01	0.00	-0.00	0.03	0.04	0.05	0.00	0.04	0.00	-0.00	-0.00	0.00	]
C [	0.01	-0.00	-0.00	-0.00	-0.00	0.00	0.01	0.00	0.00	0.03	-0.00	-0.00	0.00	0.00	0.00	]
G [	-0.00	-0.00	0.00	0.00	0.04	0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	0.00	0.01	-0.00	0.01	-0.00	0.05	-0.00	-0.00	-0.00	0.01	-0.00	0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	3767	3666	3742	3783	3686	3946	3875	3754	3783	3812	3756	4081	3780	3505	3059	3426	3013	5797	6830	5934	2217	11	9418	12446	13373	2	12861	4475	3945	3584	4164	3771	3649	3698	3823	3605	3727	3817	4073	4091	3922	3884	3929	3787	3850	3756	3872	3929	4009	3788	]
C [	2926	2956	2912	2958	3139	2816	2882	2823	3079	3111	3117	2950	3050	2943	3165	4006	5240	954	1460	124	23	48	3972	934	2	9071	69	2319	2709	2769	3240	3275	2698	2571	2596	2825	2929	2957	2900	2905	2791	2865	2845	3165	3027	3029	3091	3032	2839	2944	]
G [	2955	2938	3052	3165	2941	2871	3157	3129	2959	2796	2807	2836	3059	2931	3693	3626	1983	526	3702	2213	11023	4	14	14	13	17	121	3359	3770	4606	3109	2781	3101	3165	3407	3398	3113	3142	2986	2899	2948	3108	3109	2911	3023	3079	2980	3043	3022	3146	]
T [	3781	3869	3723	3523	3663	3796	3515	3723	3608	3710	3749	3562	3540	4050	3512	2371	3193	6152	1437	5158	166	13366	25	35	41	4339	378	3276	3005	2470	2916	3602	3981	3995	3603	3601	3660	3513	3470	3534	3768	3572	3546	3566	3529	3565	3486	3425	3559	3551	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	0.00	0.01	0.02	0.02	0.02	-0.02	0.05	0.05	0.05	-0.04	0.04	0.01	0.00	0.00	0.00	]
C [	0.01	0.01	0.01	0.02	-0.00	-0.01	-0.01	-0.03	0.02	0.04	0.02	-0.02	0.05	-0.02	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.00	-0.01	0.02	0.01	0.04	-0.03	-0.05	-0.03	-0.01	-0.02	-0.00	0.01	0.01	0.02	0.01	]
T [	0.00	0.00	-0.00	0.00	0.02	-0.01	0.02	-0.00	0.05	-0.03	-0.02	-0.01	0.04	-0.00	0.01	0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4246

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4226

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2529

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1382

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 995

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 30

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 24

CWM

PFM

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000867.1	FOXA2	ENCSR000BNI	HepG2	Homo sapiens	MA0047.4
BP000868.1	FOXA2	ENCSR000BRE	A549	Homo sapiens	MA0047.4
BP000869.1	FOXA2	ENCSR066EBK	HepG2	Homo sapiens	MA0047.4
BP000870.1	FOXA2	ENCSR080XEY	liver	Homo sapiens	MA0047.4
BP000872.1	FOXA2	ENCSR490AMH	HepG2	Homo sapiens	MA0047.4