Detailed information of deep learning profile BP000869.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000869.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR066EBK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.09 0.00 0.02 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.07 -0.00 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.07 -0.00 0.09 0.07 0.05 -0.00 0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5399 6159 5300 5243 5342 5312 5377 6177 5586 5716 5258 5247 5317 5524 5580 5466 5575 5284 5014 4216 3753 4879 4378 270 6862 36 81 43 19064 205 9562 1253 12440 8807 2716 5704 6674 6461 5362 5581 5507 5635 5737 5703 5680 5338 5924 6150 5350 5514 ]
C [ 4301 3576 3628 3639 3552 3980 3713 3552 3722 4189 3503 3785 4494 4238 3935 3629 3267 4162 3342 4014 6021 3466 3117 131 26 22 14 15 18 16923 2304 3966 426 1742 4509 4166 3492 3686 3351 3940 3859 3537 3508 3524 3410 4112 3766 3343 3622 3534 ]
G [ 3443 3283 4035 3430 3539 3560 4053 3448 4061 3307 3462 3356 3481 3442 3372 3860 4170 3376 3827 4423 3505 3070 2575 49 12281 13 769 6146 50 33 223 1114 667 5637 6840 4811 3882 3227 4028 3570 3644 3465 3882 4070 4346 3520 3436 3585 3551 4101 ]
T [ 6029 6154 6209 6860 6739 6320 6029 5995 5803 5960 6949 6784 5880 5968 6285 6217 6160 6350 6989 6519 5893 7757 9102 18722 3 19101 18308 12968 39 2011 7083 12839 5639 2986 5107 4491 5124 5798 6431 6081 6162 6535 6045 5875 5736 6202 6046 6094 6649 6023 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.02 0.06 -0.02 -0.01 -0.04 0.09 -0.01 0.04 -0.02 0.04 0.01 -0.01 0.00 0.00 ]
C [ 0.02 0.03 0.02 0.01 -0.01 -0.03 -0.02 -0.06 -0.06 -0.04 0.08 -0.00 0.03 -0.03 0.00 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.03 0.09 -0.04 0.03 0.06 0.04 -0.04 -0.01 -0.01 -0.02 0.03 0.03 0.02 0.01 ]
T [ 0.01 0.00 0.01 0.02 0.07 -0.08 0.09 0.07 0.08 -0.04 0.03 0.02 0.04 0.02 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 593

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 212

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 41

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000867.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens MA0047.4
BP000868.1 FOXA2 ENCSR000BRE A549 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
BP000872.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens MA0047.4
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