Detailed information of deep learning profile BP000868.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000868.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR000BRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.02 0.01 0.00 -0.00 0.08 0.08 0.11 0.00 0.08 0.00 -0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 0.00 0.10 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.06 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.00 ]
T [ 0.00 0.02 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5612 5767 5444 5716 5686 5679 5466 5521 5451 5709 5690 5590 5631 5987 5340 4935 4684 5395 4379 8276 9788 9006 3838 84 16844 18829 20223 1 19616 7294 6261 5229 6170 5950 5671 5496 5641 5658 5553 5462 6143 6030 5757 5610 5583 5641 5888 5830 5989 5681 ]
C [ 4740 4755 4824 4547 4647 4568 4650 4781 4578 4556 4768 4760 4877 4843 4733 4693 5792 5968 7983 1388 2227 443 219 5287 3446 1387 11 20294 98 3878 4629 4867 5310 5132 4413 4838 4783 4623 4488 4679 4655 4704 4431 4854 4624 5090 4696 4697 4713 4907 ]
G [ 4730 4649 4687 4820 4550 4979 5008 4374 4805 4744 4506 4650 4374 4570 4827 4780 4942 5354 3119 910 6397 2977 15654 11 12 15 42 1 120 4842 5631 6881 4678 4467 5158 4820 4878 5042 5154 5130 4522 4493 5002 4687 4702 4519 4782 4711 4549 4653 ]
T [ 5244 5155 5371 5243 5443 5100 5202 5650 5492 5317 5362 5326 5444 4926 5426 5918 4908 3609 4845 9752 1914 7900 615 14944 24 95 50 30 492 4312 3805 3349 4168 4777 5084 5172 5024 5003 5131 5055 5006 5099 5136 5175 5417 5076 4960 5088 5075 5085 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.01 0.02 0.04 0.02 0.03 -0.05 0.10 0.08 0.11 -0.09 0.08 0.01 -0.00 -0.00 0.00 ]
C [ 0.02 0.03 0.03 0.03 -0.01 -0.01 -0.02 -0.03 0.05 0.05 0.04 -0.05 0.10 -0.04 0.02 0.03 0.03 0.02 ]
G [ 0.02 0.02 0.03 0.02 -0.03 0.04 -0.00 0.08 -0.08 -0.08 -0.08 -0.02 -0.04 -0.01 0.01 0.03 0.03 0.02 ]
T [ -0.00 -0.00 -0.01 0.01 0.04 -0.02 0.04 -0.01 0.11 -0.06 -0.02 -0.03 0.07 -0.02 0.01 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5622

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1632

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 894

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 422

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 412

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 342

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 55

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 28

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000867.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens MA0047.4
BP000869.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
BP000872.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens MA0047.4
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