JASPAR - FOXA2 - BP000870.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	FOXA2
Model ID:	BP000870.1
Cell line/tissue:	liver
Class:	Fork head/winged helix factors
Family:	FOX
JASPAR ID:	MA0047.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q9Y261
Source:	ENCSR080XEY
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 22116

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.01	0.01	0.00	-0.00	0.05	0.06	0.08	0.00	0.06	0.00	-0.00	-0.00	0.00	]
C [	0.01	-0.00	-0.00	-0.00	-0.00	0.00	0.01	0.00	-0.00	0.04	-0.00	-0.00	0.00	0.00	0.00	]
G [	-0.00	-0.00	0.00	-0.00	0.05	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.01	0.00	]
T [	0.00	0.01	-0.00	0.01	0.00	0.08	-0.00	-0.00	-0.00	0.02	-0.00	0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	6214	6058	6185	6214	6095	6334	6317	6223	6308	6324	6184	6737	6191	5775	5299	5967	5233	8783	10874	9524	4119	28	15140	19977	21985	4	21401	7483	6167	5526	7068	6417	6018	6059	6593	6095	6039	6321	6748	6824	6365	6467	6527	6409	6500	6181	6541	6436	6531	6305	]
C [	4847	4903	4733	4944	5069	4816	4741	4731	4992	5027	4946	4842	4868	5034	5358	6252	8065	1935	2729	257	20	313	6883	1961	16	14024	114	3715	4441	4464	5009	5299	4504	4543	4313	4608	4677	4821	4825	4781	4582	4725	4654	5130	4915	4993	4952	5037	4642	4859	]
G [	4836	4956	5028	5195	4976	4697	5095	4984	4852	4699	4703	4756	5098	4903	5730	5791	3413	1305	5676	3593	17642	8	43	50	41	42	170	5136	6238	7743	5335	4431	5001	5159	5352	5420	5130	5292	4888	4736	4837	5125	5044	4774	4876	4998	4894	4915	5013	5038	]
T [	6219	6199	6170	5763	5976	6269	5963	6178	5964	6066	6283	5781	5959	6404	5729	4106	5405	10093	2837	8742	335	21767	50	128	74	8046	431	5782	5270	4383	4704	5969	6593	6355	5858	5993	6270	5682	5655	5775	6332	5799	5891	5803	5825	5944	5729	5728	5930	5914	]

Hypothetical CWM

A [	0.00	-0.00	0.00	0.00	0.01	0.03	0.02	0.03	-0.02	0.07	0.06	0.08	-0.06	0.06	0.01	0.00	0.00	0.01	]
C [	0.01	0.01	0.02	0.02	-0.01	-0.01	-0.02	-0.05	0.01	0.04	0.03	-0.04	0.06	-0.03	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.02	0.01	-0.02	0.02	-0.00	0.06	-0.05	-0.07	-0.07	-0.03	-0.04	-0.01	0.01	0.02	0.02	0.01	]
T [	0.00	0.00	-0.00	0.01	0.03	-0.01	0.03	-0.01	0.08	-0.03	-0.01	-0.01	0.06	-0.01	0.01	0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3640

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2804

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2312

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1649

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 346

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 198

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 63

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 49

CWM

PFM

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000867.1	FOXA2	ENCSR000BNI	HepG2	Homo sapiens	MA0047.4
BP000868.1	FOXA2	ENCSR000BRE	A549	Homo sapiens	MA0047.4
BP000869.1	FOXA2	ENCSR066EBK	HepG2	Homo sapiens	MA0047.4
BP000871.1	FOXA2	ENCSR310NYI	liver	Homo sapiens	MA0047.4
BP000872.1	FOXA2	ENCSR490AMH	HepG2	Homo sapiens	MA0047.4