Detailed information of deep learning profile BP000867.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000867.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR000BNI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.09 0.00 0.01 -0.00 0.02 0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.06 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 0.00 0.00 0.07 0.00 0.09 0.07 0.06 -0.00 0.00 0.01 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 4482 4716 4993 4835 4840 4634 4536 4573 4793 4625 4724 4814 4761 4414 3907 3189 3840 4226 441 5019 10 90 61 17578 422 7530 1841 8683 4382 3137 4410 5092 4883 4301 4852 4856 4885 5009 4981 5088 4772 4719 5108 4756 4779 4536 4654 4634 4610 4556 ]
C [ 4093 3721 3970 3937 4280 3650 3978 4592 4276 4311 3993 3918 4459 3801 3974 6304 4547 4046 122 32 22 8 16 1 15128 2845 5290 697 2893 4618 4216 4012 4089 3893 3928 3978 3764 3906 3945 3660 4312 4147 3854 4098 3953 3900 4113 4047 3811 4094 ]
G [ 3892 4235 3695 3967 3629 3712 3652 3693 3690 3715 3891 4178 3566 4328 4625 3777 3463 3269 76 12592 5 1245 4576 38 72 219 1995 1197 6513 4963 4952 4139 3817 4026 3856 3980 3933 3786 3952 4097 3800 3712 3800 3830 4033 4054 3860 3983 3966 4035 ]
T [ 5176 4971 4985 4904 4894 5647 5477 4785 4884 4992 5035 4733 4857 5100 5137 4373 5793 6102 17004 0 17606 16300 12990 26 2021 7049 8517 7066 3855 4925 4065 4400 4854 5423 5007 4829 5061 4942 4765 4798 4759 5065 4881 4959 4878 5153 5016 4979 5256 4958 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.00 -0.01 0.06 -0.02 -0.01 -0.03 0.09 -0.00 0.03 -0.01 0.03 0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.03 0.02 0.01 -0.01 -0.04 -0.02 -0.08 -0.08 -0.06 0.07 0.00 0.03 -0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.01 -0.03 0.09 -0.05 0.03 0.04 0.04 -0.04 -0.02 -0.01 -0.01 0.02 0.02 0.02 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.07 -0.08 0.09 0.07 0.08 -0.04 0.02 0.02 0.03 0.02 -0.00 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4073

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1386

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 878

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 226

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 25

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000868.1 FOXA2 ENCSR000BRE A549 Homo sapiens MA0047.4
BP000869.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
BP000872.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens MA0047.4
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