Detailed information of deep learning profile BP000872.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000872.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR490AMH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.00 0.00 -0.00 0.05 0.05 0.07 0.00 0.05 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.00 0.05 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 0.01 0.00 0.06 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3299 3137 3179 3327 2980 3533 3139 3155 3112 3054 3130 3091 3640 3069 3076 3480 3101 2842 2566 3407 2467 4796 6048 4550 1212 15 9089 11025 11975 5 11568 4391 4626 2993 3170 3543 3035 2995 3108 3287 3120 3051 4065 4110 3068 3103 3107 3098 3328 3919 ]
C [ 3199 2990 2579 3137 3198 2592 2597 2521 2531 3159 3016 2947 2586 2714 2757 3291 2731 2703 3373 3469 4335 831 1273 114 44 18 2877 944 6 11975 41 2199 2076 2496 3658 3045 2404 3234 3045 2554 2442 2611 2483 2569 2438 3135 2602 3280 2667 2594 ]
G [ 2570 2778 3228 2666 2793 2804 2600 2905 3387 2471 2559 2809 2564 3157 3034 2516 2600 2711 3292 3200 2107 486 3629 2308 10425 3 8 5 6 1 60 2852 2656 4528 2774 2662 3466 2716 2754 3273 3413 3588 2494 2495 3431 2724 2681 2585 3201 2627 ]
T [ 2941 3104 3023 2879 3038 3080 3673 3428 2979 3325 3304 3162 3219 3069 3142 2722 3577 3753 2778 1933 3100 5896 1059 5037 328 11973 35 35 22 28 340 2567 2651 1992 2407 2759 3104 3064 3102 2895 3034 2759 2967 2835 3072 3047 3619 3046 2813 2869 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.02 0.01 0.01 -0.03 0.06 0.06 0.07 -0.06 0.05 0.01 0.00 -0.00 -0.00 ]
C [ 0.02 -0.00 -0.00 -0.01 -0.02 0.04 0.03 0.03 -0.03 0.07 -0.02 0.01 0.01 0.02 0.02 ]
G [ 0.01 -0.02 0.02 0.01 0.06 -0.04 -0.06 -0.06 -0.02 -0.03 -0.01 0.01 0.01 0.02 0.02 ]
T [ 0.00 0.02 -0.01 0.02 -0.00 0.06 -0.02 -0.02 -0.02 0.04 -0.01 0.00 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7674

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 7651

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 4273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 521

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 63

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 26

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000867.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens MA0047.4
BP000868.1 FOXA2 ENCSR000BRE A549 Homo sapiens MA0047.4
BP000869.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
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