JASPAR - FOXA2 - BP000871.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	FOXA2
Model ID:	BP000871.1
Cell line/tissue:	liver
Class:	Fork head/winged helix factors
Family:	FOX
JASPAR ID:	MA0047.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q9Y261
Source:	ENCSR310NYI
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 13429

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.00	-0.00	0.01	-0.00	-0.00	-0.00	0.05	-0.00	0.01	-0.00	0.01	0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.04	0.00	0.00	-0.00	-0.00	]
G [	0.00	0.00	0.00	-0.00	-0.00	0.03	0.00	0.00	0.01	0.00	-0.00	-0.00	-0.00	-0.00	0.01	]
T [	0.00	-0.00	-0.00	0.00	0.04	0.00	0.05	0.04	0.03	-0.00	0.00	0.01	0.01	0.00	-0.00	]

Frequency matrix

A [	3551	3559	3425	3486	3565	3529	3566	3546	3572	3768	3534	3470	3513	3660	3601	3603	3995	3981	3602	2916	2470	3005	3276	378	4339	41	35	25	13366	166	5158	1437	6152	3193	2371	3512	4050	3540	3562	3749	3710	3608	3723	3515	3796	3663	3523	3723	3869	3781	]
C [	3146	3022	3043	2980	3079	3023	2911	3109	3108	2948	2899	2986	3142	3113	3398	3407	3165	3101	2781	3109	4606	3770	3359	121	17	13	14	14	4	11023	2213	3702	526	1983	3626	3693	2931	3059	2836	2807	2796	2959	3129	3157	2871	2941	3165	3052	2938	2955	]
G [	2944	2839	3032	3091	3029	3027	3165	2845	2865	2791	2905	2900	2957	2929	2825	2596	2571	2698	3275	3240	2769	2709	2319	69	9071	2	934	3972	48	23	124	1460	954	5240	4006	3165	2943	3050	2950	3117	3111	3079	2823	2882	2816	3139	2958	2912	2956	2926	]
T [	3788	4009	3929	3872	3756	3850	3787	3929	3884	3922	4091	4073	3817	3727	3605	3823	3698	3649	3771	4164	3584	3945	4475	12861	2	13373	12446	9418	11	2217	5934	6830	5797	3013	3426	3059	3505	3780	4081	3756	3812	3783	3754	3875	3946	3686	3783	3742	3666	3767	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	0.01	-0.00	0.04	-0.01	-0.02	-0.03	0.05	-0.00	0.02	-0.01	0.02	0.00	-0.00	0.00	0.00	]
C [	0.01	0.02	0.01	0.01	-0.00	-0.02	-0.01	-0.03	-0.05	-0.03	0.04	0.01	0.02	-0.01	0.00	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.02	0.05	-0.02	0.02	0.04	0.02	-0.03	-0.01	-0.01	-0.00	0.02	0.01	0.01	0.01	]
T [	0.00	0.00	0.00	0.01	0.04	-0.04	0.05	0.05	0.05	-0.02	0.02	0.02	0.02	0.01	0.00	0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4246

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4226

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2529

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1382

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 995

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 30

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 24

CWM

PFM

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000867.1	FOXA2	ENCSR000BNI	HepG2	Homo sapiens	MA0047.4
BP000868.1	FOXA2	ENCSR000BRE	A549	Homo sapiens	MA0047.4
BP000869.1	FOXA2	ENCSR066EBK	HepG2	Homo sapiens	MA0047.4
BP000870.1	FOXA2	ENCSR080XEY	liver	Homo sapiens	MA0047.4
BP000872.1	FOXA2	ENCSR490AMH	HepG2	Homo sapiens	MA0047.4