JASPAR - FOXA2 - BP000870.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	FOXA2
Model ID:	BP000870.1
Cell line/tissue:	liver
Class:	Fork head/winged helix factors
Family:	FOX
JASPAR ID:	MA0047.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q9Y261
Source:	ENCSR080XEY
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 22116

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.00	-0.00	0.02	-0.00	-0.00	-0.00	0.08	0.00	0.01	-0.00	0.01	0.00	]
C [	0.00	0.01	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.05	-0.00	0.00	-0.00	-0.00	]
G [	0.00	0.00	0.00	-0.00	-0.00	0.04	-0.00	0.00	0.01	0.00	-0.00	-0.00	-0.00	-0.00	0.01	]
T [	0.00	-0.00	-0.00	0.00	0.06	0.00	0.08	0.06	0.05	-0.00	0.00	0.01	0.01	0.00	-0.00	]

Frequency matrix

A [	5914	5930	5728	5729	5944	5825	5803	5891	5799	6332	5775	5655	5682	6270	5993	5858	6355	6593	5969	4704	4383	5270	5782	431	8046	74	128	50	21767	335	8742	2837	10093	5405	4106	5729	6404	5959	5781	6283	6066	5964	6178	5963	6269	5976	5763	6170	6199	6219	]
C [	5038	5013	4915	4894	4998	4876	4774	5044	5125	4837	4736	4888	5292	5130	5420	5352	5159	5001	4431	5335	7743	6238	5136	170	42	41	50	43	8	17642	3593	5676	1305	3413	5791	5730	4903	5098	4756	4703	4699	4852	4984	5095	4697	4976	5195	5028	4956	4836	]
G [	4859	4642	5037	4952	4993	4915	5130	4654	4725	4582	4781	4825	4821	4677	4608	4313	4543	4504	5299	5009	4464	4441	3715	114	14024	16	1961	6883	313	20	257	2729	1935	8065	6252	5358	5034	4868	4842	4946	5027	4992	4731	4741	4816	5069	4944	4733	4903	4847	]
T [	6305	6531	6436	6541	6181	6500	6409	6527	6467	6365	6824	6748	6321	6039	6095	6593	6059	6018	6417	7068	5526	6167	7483	21401	4	21985	19977	15140	28	4119	9524	10874	8783	5233	5967	5299	5775	6191	6737	6184	6324	6308	6223	6317	6334	6095	6214	6185	6058	6214	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	0.01	-0.01	0.06	-0.01	-0.01	-0.03	0.08	-0.01	0.03	-0.01	0.03	0.01	-0.00	0.00	0.00	]
C [	0.01	0.02	0.02	0.01	-0.01	-0.04	-0.03	-0.07	-0.07	-0.05	0.06	-0.00	0.02	-0.02	0.01	0.02	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.03	0.06	-0.04	0.03	0.04	0.01	-0.05	-0.02	-0.01	-0.01	0.02	0.02	0.01	0.01	]
T [	0.01	0.00	0.00	0.01	0.06	-0.06	0.08	0.06	0.07	-0.02	0.03	0.02	0.03	0.01	0.00	0.00	-0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3640

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2804

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2312

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1649

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 346

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 198

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 63

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 49

CWM

PFM

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000867.1	FOXA2	ENCSR000BNI	HepG2	Homo sapiens	MA0047.4
BP000868.1	FOXA2	ENCSR000BRE	A549	Homo sapiens	MA0047.4
BP000869.1	FOXA2	ENCSR066EBK	HepG2	Homo sapiens	MA0047.4
BP000871.1	FOXA2	ENCSR310NYI	liver	Homo sapiens	MA0047.4
BP000872.1	FOXA2	ENCSR490AMH	HepG2	Homo sapiens	MA0047.4