Detailed information of deep learning profile BP000869.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000869.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR066EBK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 0.00 -0.00 0.05 0.07 0.09 -0.00 0.07 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 0.07 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.02 0.00 0.09 -0.00 -0.00 -0.00 0.02 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 6023 6649 6094 6046 6202 5736 5875 6045 6535 6162 6081 6431 5798 5124 4491 5107 2986 5639 12839 7083 2011 39 12968 18308 19101 3 18722 9102 7757 5893 6519 6989 6350 6160 6217 6285 5968 5880 6784 6949 5960 5803 5995 6029 6320 6739 6860 6209 6154 6029 ]
C [ 4101 3551 3585 3436 3520 4346 4070 3882 3465 3644 3570 4028 3227 3882 4811 6840 5637 667 1114 223 33 50 6146 769 13 12281 49 2575 3070 3505 4423 3827 3376 4170 3860 3372 3442 3481 3356 3462 3307 4061 3448 4053 3560 3539 3430 4035 3283 3443 ]
G [ 3534 3622 3343 3766 4112 3410 3524 3508 3537 3859 3940 3351 3686 3492 4166 4509 1742 426 3966 2304 16923 18 15 14 22 26 131 3117 3466 6021 4014 3342 4162 3267 3629 3935 4238 4494 3785 3503 4189 3722 3552 3713 3980 3552 3639 3628 3576 4301 ]
T [ 5514 5350 6150 5924 5338 5680 5703 5737 5635 5507 5581 5362 6461 6674 5704 2716 8807 12440 1253 9562 205 19064 43 81 36 6862 270 4378 4879 3753 4216 5014 5284 5575 5466 5580 5524 5317 5247 5258 5716 5586 6177 5377 5312 5342 5243 5300 6159 5399 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.02 0.04 0.02 0.03 -0.04 0.08 0.07 0.09 -0.08 0.07 0.02 0.01 0.00 0.01 ]
C [ 0.01 0.02 0.03 0.03 -0.02 -0.01 -0.01 -0.04 0.04 0.06 0.03 -0.04 0.09 -0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.00 -0.03 0.03 -0.00 0.08 -0.04 -0.06 -0.06 -0.02 -0.03 -0.01 0.01 0.02 0.03 0.02 ]
T [ 0.00 0.00 -0.01 0.01 0.04 -0.02 0.04 -0.01 0.09 -0.04 -0.01 -0.02 0.06 -0.02 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 593

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 212

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 41

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000867.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens MA0047.4
BP000868.1 FOXA2 ENCSR000BRE A549 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
BP000872.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens MA0047.4
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