Detailed information of deep learning profile BP000868.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000868.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR000BRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.08 -0.00 0.01 -0.00 0.02 0.00 ]
C [ 0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.06 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.10 0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 -0.00 0.00 0.08 0.00 0.11 0.08 0.08 -0.00 0.00 0.01 0.02 0.01 -0.00 ]

Frequency matrix

A [ 5085 5075 5088 4960 5076 5417 5175 5136 5099 5006 5055 5131 5003 5024 5172 5084 4777 4168 3349 3805 4312 492 30 50 95 24 14944 615 7900 1914 9752 4845 3609 4908 5918 5426 4926 5444 5326 5362 5317 5492 5650 5202 5100 5443 5243 5371 5155 5244 ]
C [ 4653 4549 4711 4782 4519 4702 4687 5002 4493 4522 5130 5154 5042 4878 4820 5158 4467 4678 6881 5631 4842 120 1 42 15 12 11 15654 2977 6397 910 3119 5354 4942 4780 4827 4570 4374 4650 4506 4744 4805 4374 5008 4979 4550 4820 4687 4649 4730 ]
G [ 4907 4713 4697 4696 5090 4624 4854 4431 4704 4655 4679 4488 4623 4783 4838 4413 5132 5310 4867 4629 3878 98 20294 11 1387 3446 5287 219 443 2227 1388 7983 5968 5792 4693 4733 4843 4877 4760 4768 4556 4578 4781 4650 4568 4647 4547 4824 4755 4740 ]
T [ 5681 5989 5830 5888 5641 5583 5610 5757 6030 6143 5462 5553 5658 5641 5496 5671 5950 6170 5229 6261 7294 19616 1 20223 18829 16844 84 3838 9006 9788 8276 4379 5395 4684 4935 5340 5987 5631 5590 5690 5709 5451 5521 5466 5679 5686 5716 5444 5767 5612 ]

Hypothetical CWM

A [ -0.01 -0.01 -0.00 0.01 -0.02 0.07 -0.03 -0.02 -0.06 0.11 -0.01 0.04 -0.02 0.04 0.01 -0.01 -0.00 -0.00 ]
C [ 0.02 0.03 0.03 0.01 -0.01 -0.04 -0.02 -0.08 -0.08 -0.08 0.08 -0.00 0.04 -0.03 0.02 0.03 0.02 0.02 ]
G [ 0.02 0.03 0.03 0.02 -0.04 0.10 -0.05 0.04 0.05 0.05 -0.03 -0.02 -0.01 -0.01 0.03 0.03 0.03 0.02 ]
T [ 0.00 -0.00 -0.00 0.01 0.08 -0.09 0.11 0.08 0.10 -0.05 0.03 0.02 0.04 0.02 -0.01 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5622

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5166

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1632

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 894

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 422

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 412

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 342

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 177

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 65

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 55

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 37

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 28

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000867.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens MA0047.4
BP000869.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
BP000872.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens MA0047.4
Showing 5 profiles of page 1 from 1 pages
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