Detailed information of deep learning profile BP000867.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000867.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0047.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR000BNI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.01 0.00 -0.00 0.06 0.07 0.09 0.00 0.07 0.00 0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.06 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.02 -0.00 0.01 0.00 0.09 -0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4958 5256 4979 5016 5153 4878 4959 4881 5065 4759 4798 4765 4942 5061 4829 5007 5423 4854 4400 4065 4925 3855 7066 8517 7049 2021 26 12990 16300 17606 0 17004 6102 5793 4373 5137 5100 4857 4733 5035 4992 4884 4785 5477 5647 4894 4904 4985 4971 5176 ]
C [ 4035 3966 3983 3860 4054 4033 3830 3800 3712 3800 4097 3952 3786 3933 3980 3856 4026 3817 4139 4952 4963 6513 1197 1995 219 72 38 4576 1245 5 12592 76 3269 3463 3777 4625 4328 3566 4178 3891 3715 3690 3693 3652 3712 3629 3967 3695 4235 3892 ]
G [ 4094 3811 4047 4113 3900 3953 4098 3854 4147 4312 3660 3945 3906 3764 3978 3928 3893 4089 4012 4216 4618 2893 697 5290 2845 15128 1 16 8 22 32 122 4046 4547 6304 3974 3801 4459 3918 3993 4311 4276 4592 3978 3650 4280 3937 3970 3721 4093 ]
T [ 4556 4610 4634 4654 4536 4779 4756 5108 4719 4772 5088 4981 5009 4885 4856 4852 4301 4883 5092 4410 3137 4382 8683 1841 7530 422 17578 61 90 10 5019 441 4226 3840 3189 3907 4414 4761 4814 4724 4625 4793 4573 4536 4634 4840 4835 4993 4716 4482 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.00 0.02 0.03 0.02 0.02 -0.04 0.08 0.07 0.09 -0.08 0.07 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.01 -0.01 -0.02 -0.04 0.04 0.04 0.03 -0.05 0.09 -0.03 0.01 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.03 0.03 0.00 0.07 -0.06 -0.08 -0.08 -0.02 -0.04 -0.01 0.01 0.02 0.03 0.01 ]
T [ -0.00 -0.00 -0.01 0.01 0.03 -0.01 0.03 -0.00 0.09 -0.03 -0.01 -0.02 0.06 -0.01 0.00 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4073

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1386

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 878

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 226

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 25

CWM

PFM

     

HCWM

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000868.1 FOXA2 ENCSR000BRE A549 Homo sapiens MA0047.4
BP000869.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens MA0047.4
BP000870.1 FOXA2 ENCSR080XEY liver Homo sapiens MA0047.4
BP000871.1 FOXA2 ENCSR310NYI liver Homo sapiens MA0047.4
BP000872.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens MA0047.4
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