Detailed information of deep learning profile BP000719.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000719.1
Cell line/tissue: HeLa-S3
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000ECW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 -0.00 0.06 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 0.00 0.09 -0.00 0.13 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.01 0.00 0.09 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2690 2616 2601 2683 2588 2498 2537 2796 2438 2495 2537 2692 2386 2411 2581 2958 2788 2624 2445 2571 2550 2345 3613 1455 64 10245 50 851 35 12 8499 198 1886 2644 3122 2655 2495 2296 2277 2536 2817 2521 2264 2798 3334 3085 2442 2662 2923 2812 ]
C [ 2930 3091 3131 3001 3014 3022 2995 2656 2770 2677 2693 2628 2991 3093 3002 2913 2589 2928 2945 2916 2419 2343 1934 3946 10849 195 5411 895 15 12 746 7917 4240 3309 2695 2707 2834 3272 3047 2678 2589 3053 3630 3298 2839 2601 2761 2762 2670 2709 ]
G [ 2841 2708 2550 2603 2672 2804 2898 2666 2654 2893 3143 3154 3007 2628 2542 2721 3258 3084 2748 3092 2869 4417 4236 1942 14 162 1141 9205 19 10919 1244 617 1318 2041 2852 3100 2848 2682 2684 3087 3193 3006 2527 2472 2524 2532 2813 2926 2942 2985 ]
T [ 2494 2540 2673 2668 2681 2631 2525 2837 3093 2890 2582 2481 2571 2823 2830 2363 2320 2319 2817 2376 3117 1850 1172 3612 28 353 4353 4 10886 12 466 2223 3511 2961 2286 2493 2778 2705 2947 2654 2356 2375 2534 2387 2258 2737 2939 2605 2420 2449 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 0.02 -0.01 -0.02 0.08 -0.09 0.02 -0.04 -0.05 0.05 -0.04 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 0.00 0.01 0.12 -0.03 0.11 -0.00 -0.00 -0.04 -0.00 0.06 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 0.00 -0.04 0.00 -0.01 0.10 -0.03 0.13 0.01 -0.00 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 0.00 -0.03 0.04 -0.05 -0.03 0.03 -0.10 0.09 -0.02 -0.02 0.03 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4630

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 219

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 24

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages