Detailed information of deep learning profile BP000721.1

  1. Home
  2. Deep Learning Profile > BP000721.1
This page shows detailed deep learning-derived predictions and motifs for USF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000721.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000EHG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 ]
C [ -0.00 0.00 -0.00 0.00 0.11 0.00 0.09 0.00 0.00 0.00 -0.00 0.02 0.01 0.01 ]
G [ 0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.08 0.00 0.11 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.08 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 17 18 13 20 16 17 13 17 13 15 18 15 12 15 12 15 12 16 22 17 23 19 21 13 19 21 20 22 24 19 19 19 20 25 21 17 14 16 3 0 54 0 8 0 0 31 1 3 13 12 ]
C [ 14 13 15 11 7 14 8 12 10 11 13 8 18 17 16 12 10 7 12 7 10 9 6 8 8 9 9 6 3 5 6 12 11 9 3 9 11 5 8 54 0 49 0 0 0 4 24 25 21 16 ]
G [ 11 8 13 11 17 12 17 11 14 17 14 16 13 9 12 11 11 13 4 12 7 10 13 14 4 12 8 7 6 2 4 6 7 7 9 14 20 33 5 0 0 0 46 0 53 16 11 13 15 11 ]
T [ 12 15 13 12 14 11 16 14 17 11 9 15 11 13 14 16 21 18 16 18 14 16 14 19 23 12 17 19 21 28 25 17 16 13 21 14 9 0 38 0 0 5 0 54 1 3 18 13 5 15 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.01 0.01 -0.02 -0.03 0.08 -0.07 0.02 -0.03 -0.03 0.03 -0.02 -0.00 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.02 0.11 -0.04 0.09 -0.03 0.02 -0.04 0.01 0.04 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.04 0.00 -0.04 0.01 -0.03 0.09 -0.05 0.11 0.01 -0.00 0.02 0.01 0.02 ]
T [ 0.00 0.00 0.00 -0.00 -0.03 0.03 -0.03 -0.03 0.02 -0.07 0.08 -0.03 -0.01 0.02 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3327

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages