Detailed information of deep learning profile BP000718.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000718.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000ECD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.07 0.00 0.00 0.00 0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.05 -0.00 0.11 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1562 1606 1597 1825 1590 1643 1325 1248 1387 2074 1684 1268 1250 1301 1229 1197 1622 1903 1841 1827 1390 1269 1643 2122 1440 224 1 7470 4 2513 121 1 2172 534 947 2204 1429 1717 1201 1347 1339 1743 1806 1617 1330 1512 2063 2186 1787 1590 ]
C [ 2258 2089 2173 2202 2387 1967 2369 2350 2265 2035 1877 1761 1731 1718 2391 2696 2472 2022 1848 2258 2361 2284 1700 1166 515 753 7487 8 6543 511 117 0 1496 3522 3643 2148 2426 2132 2578 2696 2051 1868 1892 2304 2549 2474 2185 1834 1891 2152 ]
G [ 2115 2072 2241 2035 2085 2024 2033 1984 2234 2033 1840 2000 2784 3283 2502 1946 1962 2419 2710 2140 2084 2066 2594 3313 5413 516 3 11 427 4462 95 7484 3068 1531 1614 1868 2085 2284 2211 1829 2136 2428 2460 2223 2041 2104 1945 2079 2143 2377 ]
T [ 1557 1725 1481 1430 1430 1858 1765 1910 1606 1350 2091 2463 1727 1190 1370 1653 1436 1148 1093 1267 1657 1873 1555 891 124 5999 1 3 518 6 7159 7 756 1905 1288 1272 1552 1359 1502 1620 1966 1453 1334 1348 1572 1402 1299 1393 1671 1373 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 0.02 -0.02 -0.03 0.08 -0.08 0.02 -0.02 -0.06 0.03 -0.03 -0.01 -0.00 -0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.01 0.11 -0.03 0.08 -0.02 0.00 -0.06 0.01 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.00 -0.05 -0.00 -0.01 0.08 -0.03 0.11 0.01 0.01 0.02 0.01 0.02 0.01 ]
T [ 0.00 -0.00 0.00 -0.01 -0.04 0.04 -0.05 -0.03 0.01 -0.08 0.07 -0.03 -0.02 0.01 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 103

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages