Detailed information of deep learning profile BP000722.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000722.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR145QNL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.07 0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.11 -0.00 0.07 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 -0.00 0.08 -0.00 0.11 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 0.09 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1457 1350 1490 1434 1327 1336 1451 1303 1335 1320 1423 1382 1301 1307 1638 1413 1354 1350 1401 1290 1359 1869 851 13 6415 12 394 5 6 5086 197 918 1351 1563 1452 1238 1198 1230 1430 1442 1282 1172 1508 1920 1653 1293 1401 1670 1582 1602 ]
C [ 1976 2124 1950 2006 2031 1947 1861 1866 1779 1840 1868 1914 2042 2180 1922 1891 2046 2070 1865 1727 1464 1280 2728 6688 82 4608 322 18 7 429 4582 2990 2184 1787 1849 1836 2099 1928 1770 1828 2140 2483 2153 1758 1785 1943 1932 1789 1827 1821 ]
G [ 1928 1835 1852 1823 1866 2037 1827 1797 1958 2113 2161 2003 1769 1732 1786 2164 2021 1777 2152 1918 3025 2966 1338 3 99 410 5989 16 6691 970 635 989 1565 2022 2096 2099 1819 1930 2072 2176 2042 1699 1671 1747 1788 1855 1947 1935 1952 1802 ]
T [ 1347 1399 1416 1445 1484 1388 1569 1742 1636 1435 1256 1409 1596 1489 1362 1240 1287 1511 1290 1773 860 593 1791 4 112 1678 3 6669 4 223 1294 1811 1608 1336 1311 1535 1592 1620 1436 1262 1244 1354 1376 1283 1482 1617 1428 1314 1347 1483 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.01 0.02 -0.02 -0.04 0.08 -0.08 0.01 -0.04 -0.05 0.05 -0.03 -0.01 0.00 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.02 0.00 0.01 0.11 -0.03 0.09 -0.01 0.01 -0.04 0.00 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.00 -0.04 0.01 -0.01 0.09 -0.03 0.11 0.01 -0.00 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.02 0.04 -0.04 -0.03 0.02 -0.08 0.09 -0.03 -0.02 0.02 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 599

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 76

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 20

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages