Detailed information of deep learning profile BP000725.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000725.1
Cell line/tissue: IMR-90
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR513UQG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.09 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 -0.00 0.10 -0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.06 -0.00 0.12 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.03 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3651 3703 3798 3977 3806 3862 3482 3375 3440 4292 3819 3309 3325 3477 3230 3207 3650 4222 3960 3920 3329 3247 3583 4488 4422 1039 6 15870 10 6794 515 18 4338 1508 2429 4266 3396 3613 3293 3250 3312 3841 3921 3728 3305 3666 4220 4419 3893 3650 ]
C [ 4427 4337 4349 4407 4556 4160 4476 4446 4610 4098 3874 3846 3879 3824 4644 4922 4868 4222 4007 4316 4858 4357 3496 3445 2046 3124 16006 31 15348 491 534 35 3122 7709 6800 4548 4626 4107 4524 4979 4203 3889 4018 4519 4972 4720 4366 4000 4116 4364 ]
G [ 4226 4045 4249 4067 4096 4093 4123 4097 4331 4135 3999 4116 4947 5491 4601 4013 4017 4525 4796 4463 4178 4179 5339 6012 8935 1889 18 101 278 8716 418 15919 6559 3124 3531 3910 4329 4649 4576 4099 4335 4744 4710 4396 4080 4158 3983 4120 4159 4521 ]
T [ 3728 3947 3636 3581 3574 3917 3951 4114 3651 3507 4340 4761 3881 3240 3557 3890 3497 3063 3269 3333 3667 4249 3614 2087 629 9980 2 30 396 31 14565 60 2013 3691 3272 3308 3681 3663 3639 3704 4182 3558 3383 3389 3675 3488 3463 3493 3864 3497 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 0.02 -0.02 -0.03 0.09 -0.09 0.03 -0.03 -0.06 0.03 -0.03 -0.01 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.02 0.12 -0.03 0.10 -0.03 -0.00 -0.05 0.00 0.04 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 -0.00 -0.04 -0.01 -0.02 0.10 -0.03 0.12 0.02 0.01 0.02 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.04 0.04 -0.07 -0.03 0.02 -0.09 0.08 -0.02 -0.01 0.02 -0.01 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 908

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 684

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 40

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages