Detailed information of deep learning profile BP000719.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000719.1
Cell line/tissue: HeLa-S3
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000ECW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.09 0.00 0.01 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.13 -0.00 0.09 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.06 -0.00 0.12 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 2449 2420 2605 2939 2737 2258 2387 2534 2375 2356 2654 2947 2705 2778 2493 2286 2961 3511 2223 466 12 10886 4 4353 353 28 3612 1172 1850 3117 2376 2817 2319 2320 2363 2830 2823 2571 2481 2582 2890 3093 2837 2525 2631 2681 2668 2673 2540 2494 ]
C [ 2985 2942 2926 2813 2532 2524 2472 2527 3006 3193 3087 2684 2682 2848 3100 2852 2041 1318 617 1244 10919 19 9205 1141 162 14 1942 4236 4417 2869 3092 2748 3084 3258 2721 2542 2628 3007 3154 3143 2893 2654 2666 2898 2804 2672 2603 2550 2708 2841 ]
G [ 2709 2670 2762 2761 2601 2839 3298 3630 3053 2589 2678 3047 3272 2834 2707 2695 3309 4240 7917 746 12 15 895 5411 195 10849 3946 1934 2343 2419 2916 2945 2928 2589 2913 3002 3093 2991 2628 2693 2677 2770 2656 2995 3022 3014 3001 3131 3091 2930 ]
T [ 2812 2923 2662 2442 3085 3334 2798 2264 2521 2817 2536 2277 2296 2495 2655 3122 2644 1886 198 8499 12 35 851 50 10245 64 1455 3613 2345 2550 2571 2445 2624 2788 2958 2581 2411 2386 2692 2537 2495 2438 2796 2537 2498 2588 2683 2601 2616 2690 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.03 -0.02 -0.02 0.09 -0.10 0.03 -0.03 -0.05 0.04 -0.03 0.00 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.01 0.13 -0.03 0.10 -0.01 0.00 -0.04 0.00 0.05 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.06 -0.00 -0.04 -0.00 -0.00 0.11 -0.03 0.12 0.01 0.00 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.00 -0.04 0.05 -0.05 -0.04 0.02 -0.09 0.08 -0.02 -0.01 0.02 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4630

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 219

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 24

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages