JASPAR - ATF2 - BP000709.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for ATF2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ATF2
Model ID:	BP000709.1
Cell line/tissue:	GM12878
Class:	Basic leucine zipper factors (bZIP)
Family:	Jun-related
JASPAR ID:	MA1632.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15336
Source:	ENCSR000BQK
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 2371

Contribution weight matrix (CWM)

A [	0.00	0.00	0.00	0.00	0.01	-0.00	-0.00	0.03	-0.00	0.00	0.00	0.00	0.04	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.01	0.00	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	0.00	-0.00	0.03	0.00	-0.00	0.03	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	0.03	0.00	-0.00	0.00	-0.00	0.04	-0.00	-0.00	0.01	0.00	0.00	0.00	0.00	]

Frequency matrix

A [	625	613	620	673	666	656	638	624	654	664	703	694	687	702	677	789	686	791	779	786	1499	36	7	2348	128	72	3	532	2362	51	344	479	491	501	645	634	676	656	684	624	597	580	627	607	679	642	624	629	658	630	]
C [	514	595	525	477	517	527	505	521	529	515	495	498	497	510	446	471	532	498	507	293	220	39	6	1	653	86	10	1826	0	475	856	562	575	625	527	532	561	573	549	574	540	514	518	573	514	503	546	539	571	532	]
G [	581	557	539	578	538	484	579	525	557	561	550	561	544	551	587	527	637	577	604	965	586	3	2012	17	476	2212	0	6	7	244	406	571	471	465	452	484	536	505	485	497	528	549	521	562	511	557	504	554	501	514	]
T [	651	606	687	643	650	704	649	701	631	631	623	618	643	608	661	584	516	505	481	327	66	2293	346	5	1114	1	2358	7	2	1601	765	759	834	780	747	721	598	637	653	676	706	728	705	629	667	669	697	649	641	695	]

Hypothetical CWM

A [	0.00	0.00	0.00	0.00	0.02	-0.01	-0.02	0.03	-0.01	0.01	-0.01	0.02	0.04	-0.01	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.02	-0.02	0.03	0.00	-0.00	0.03	-0.02	0.01	0.01	0.01	0.00	0.00	]
G [	0.00	0.00	0.01	0.01	0.01	-0.02	0.03	-0.00	0.00	0.03	-0.02	-0.02	-0.00	-0.00	-0.00	0.01	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.00	-0.01	0.03	0.02	-0.01	0.00	-0.01	0.04	-0.02	-0.01	0.02	0.00	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5861

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3293

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2186

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1937

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 876

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 585

CWM

PFM

HCWM

7 profiles found for the same TF (ATF2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000710.1	ATF2	ENCSR000BQU	H1	Homo sapiens	MA1632.2
BP000711.1	ATF2	ENCSR014ARU	K562	Homo sapiens	MA1632.2
BP000712.1	ATF2	ENCSR047BUZ	HepG2	Homo sapiens	MA1632.2
BP000713.1	ATF2	ENCSR217HTK	HEK293	Homo sapiens	MA1632.2
BP000714.1	ATF2	ENCSR869IUD	K562	Homo sapiens	MA1632.2
BP000715.1	ATF2	ENCSR908HWZ	HepG2	Homo sapiens	MA1632.2
BP000716.1	ATF2	ENCSR961PPA	GM12878	Homo sapiens	MA1632.2