Detailed information of deep learning profile BP000716.1

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This page shows detailed deep learning-derived predictions and motifs for ATF2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF2
Model ID: BP000716.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: Jun-related
JASPAR ID: MA1632.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P15336  
Source: ENCSR961PPA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.06 -0.00 -0.00 0.12 0.00 0.01 -0.00 0.00 0.10 -0.00 -0.00 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.14 -0.00 -0.00 0.10 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.01 0.00 -0.00 0.08 -0.00 -0.00 0.04 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 0.10 0.01 -0.00 0.00 -0.00 0.12 -0.00 -0.00 0.05 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5482 5710 5906 5840 5557 5649 5494 5642 5602 5496 5357 5668 5609 5702 6637 6674 7201 6629 5459 5648 14735 186 131 17951 7 11923 76 976 17855 186 3195 5989 5168 5441 5803 5857 5312 5422 5585 5952 5674 5646 6063 5720 5809 5482 5459 5535 5426 5874 ]
C [ 3662 3545 3348 3380 3508 3338 3560 3344 3686 3771 3738 3390 3637 3470 2660 2866 2647 2752 3199 2980 751 214 205 5 18038 1299 51 17040 39 3519 6419 3294 3440 3451 2914 3190 3528 3518 3541 3408 3319 3559 3509 3523 3521 3724 3700 3470 3597 3587 ]
G [ 3307 3309 3326 3556 3564 3277 3566 3503 3378 3160 3371 3219 3412 3459 3202 2876 3169 3289 3290 6057 2402 35 14044 65 33 4721 22 39 115 585 2082 3233 2691 2652 2661 2660 3221 3557 3345 3396 3592 3282 3113 3272 3197 3285 3224 3468 3499 3359 ]
T [ 5648 5535 5519 5323 5470 5835 5479 5610 5433 5672 5633 5822 5441 5468 5600 5683 5082 5429 6151 3414 211 17664 3719 78 21 156 17950 44 90 13809 6403 5583 6800 6555 6721 6392 6038 5602 5628 5343 5514 5612 5414 5584 5572 5608 5716 5626 5577 5279 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 0.01 0.07 -0.06 -0.06 0.12 -0.08 0.02 -0.04 0.04 0.10 -0.06 -0.00 0.01 0.01 0.00 ]
C [ -0.00 -0.00 0.02 -0.00 -0.02 0.02 -0.05 -0.10 0.14 -0.03 -0.02 0.11 -0.06 0.03 0.03 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.03 -0.06 0.10 -0.02 -0.02 0.15 -0.09 -0.05 0.02 -0.02 -0.01 0.01 -0.00 -0.00 ]
T [ 0.01 0.01 0.01 0.00 -0.06 0.10 0.05 -0.03 0.02 -0.09 0.12 -0.05 -0.06 0.07 0.01 0.00 0.01 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 67

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 48

CWM

PFM

     

HCWM

7 profiles found for the same TF (ATF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000709.1 ATF2 ENCSR000BQK GM12878 Homo sapiens MA1632.2
BP000710.1 ATF2 ENCSR000BQU H1 Homo sapiens MA1632.2
BP000711.1 ATF2 ENCSR014ARU K562 Homo sapiens MA1632.2
BP000712.1 ATF2 ENCSR047BUZ HepG2 Homo sapiens MA1632.2
BP000713.1 ATF2 ENCSR217HTK HEK293 Homo sapiens MA1632.2
BP000714.1 ATF2 ENCSR869IUD K562 Homo sapiens MA1632.2
BP000715.1 ATF2 ENCSR908HWZ HepG2 Homo sapiens MA1632.2
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