JASPAR - ATF2 - BP000709.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for ATF2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ATF2
Model ID:	BP000709.1
Cell line/tissue:	GM12878
Class:	Basic leucine zipper factors (bZIP)
Family:	Jun-related
JASPAR ID:	MA1632.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15336
Source:	ENCSR000BQK
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 2371

Contribution weight matrix (CWM)

A [	0.00	0.00	0.00	0.00	0.01	-0.00	-0.00	0.04	-0.00	0.00	-0.00	0.00	0.03	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.03	-0.00	0.00	0.03	-0.00	0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	0.04	0.00	0.00	0.00	-0.00	0.03	-0.00	-0.00	0.01	0.00	0.00	0.00	0.00	]

Frequency matrix

A [	695	641	649	697	669	667	629	705	728	706	676	653	637	598	721	747	780	834	759	765	1601	2	7	2358	1	1114	5	346	2293	66	327	481	505	516	584	661	608	643	618	623	631	631	701	649	704	650	643	687	606	651	]
C [	514	501	554	504	557	511	562	521	549	528	497	485	505	536	484	452	465	471	571	406	244	7	6	0	2212	476	17	2012	3	586	965	604	577	637	527	587	551	544	561	550	561	557	525	579	484	538	578	539	557	581	]
G [	532	571	539	546	503	514	573	518	514	540	574	549	573	561	532	527	625	575	562	856	475	0	1826	10	86	653	1	6	39	220	293	507	498	532	471	446	510	497	498	495	515	529	521	505	527	517	477	525	595	514	]
T [	630	658	629	624	642	679	607	627	580	597	624	684	656	676	634	645	501	491	479	344	51	2362	532	3	72	128	2348	7	36	1499	786	779	791	686	789	677	702	687	694	703	664	654	624	638	656	666	673	620	613	625	]

Hypothetical CWM

A [	0.00	0.00	0.00	0.00	0.02	-0.01	-0.02	0.04	-0.01	0.00	-0.01	0.02	0.03	-0.01	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.02	-0.02	0.03	0.00	-0.00	0.03	-0.02	0.01	0.01	0.01	0.00	0.00	]
G [	0.00	0.00	0.01	0.01	0.01	-0.02	0.03	-0.00	0.00	0.03	-0.02	-0.02	-0.00	-0.00	-0.00	0.01	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.00	-0.01	0.04	0.02	-0.01	0.01	-0.01	0.03	-0.02	-0.01	0.02	0.00	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5861

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3293

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2186

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1937

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 876

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 585

CWM

PFM

HCWM

7 profiles found for the same TF (ATF2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000710.1	ATF2	ENCSR000BQU	H1	Homo sapiens	MA1632.2
BP000711.1	ATF2	ENCSR014ARU	K562	Homo sapiens	MA1632.2
BP000712.1	ATF2	ENCSR047BUZ	HepG2	Homo sapiens	MA1632.2
BP000713.1	ATF2	ENCSR217HTK	HEK293	Homo sapiens	MA1632.2
BP000714.1	ATF2	ENCSR869IUD	K562	Homo sapiens	MA1632.2
BP000715.1	ATF2	ENCSR908HWZ	HepG2	Homo sapiens	MA1632.2
BP000716.1	ATF2	ENCSR961PPA	GM12878	Homo sapiens	MA1632.2