Detailed information of deep learning profile BP000657.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000657.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR865RXA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.08 0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 -0.00 0.00 0.06 0.00 0.08 0.06 0.05 -0.00 0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 4181 4171 4392 5022 4410 4492 4215 4271 4209 4440 4285 4538 4420 4609 4177 3540 2724 3524 3965 389 4196 26 57 22 17575 239 7635 1755 8616 4372 2912 4140 5248 5101 4063 4677 4565 4638 4689 4795 4831 4327 4924 5189 4475 4473 4322 4440 4478 4285 ]
C [ 4000 4562 3906 4051 4143 4894 3904 3917 5090 4890 4761 4095 4108 4824 3918 4084 6733 4723 4196 89 8 18 3 11 4 15906 3359 5387 858 3169 4876 4703 3976 4003 3876 4392 4517 3976 4088 3942 3833 4826 4235 4004 4213 4008 3995 4588 4137 3970 ]
G [ 3950 4082 4780 3919 4520 3574 3837 3768 3894 3703 3813 4371 4635 3726 4450 5162 3894 3578 3281 58 13413 8 1687 4898 29 31 226 2129 1215 6586 5109 5037 4219 3934 4602 4053 4080 3906 4315 4451 4511 3947 3840 3965 3879 4686 4671 4029 4436 4647 ]
T [ 5489 4805 4542 4628 4547 4660 5664 5664 4427 4587 4761 4616 4457 4461 5075 4834 4269 5795 6178 17084 3 17568 15873 12689 12 1444 6400 8349 6931 3493 4723 3740 4177 4582 5079 4498 4458 5100 4528 4432 4445 4520 4621 4462 5053 4453 4632 4563 4569 4718 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.00 -0.01 0.05 -0.01 -0.02 -0.03 0.08 -0.00 0.03 -0.01 0.03 0.01 -0.00 0.00 -0.00 ]
C [ 0.02 0.03 0.02 0.01 -0.01 -0.03 -0.02 -0.07 -0.06 -0.03 0.06 0.01 0.03 -0.02 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.02 0.02 0.02 -0.02 0.08 -0.03 0.04 0.05 0.03 -0.02 -0.01 -0.00 -0.01 0.02 0.02 0.02 0.01 ]
T [ 0.00 -0.00 0.00 0.01 0.06 -0.06 0.08 0.06 0.07 -0.03 0.02 0.02 0.02 0.01 -0.00 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5878

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3269

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 514

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 340

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 22

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages