Detailed information of deep learning profile BP000657.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000657.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR865RXA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 0.00 -0.00 0.05 0.06 0.08 0.00 0.06 0.00 -0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 0.01 0.00 0.08 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4718 4569 4563 4632 4453 5053 4462 4621 4520 4445 4432 4528 5100 4458 4498 5079 4582 4177 3740 4723 3493 6931 8349 6400 1444 12 12689 15873 17568 3 17084 6178 5795 4269 4834 5075 4461 4457 4616 4761 4587 4427 5664 5664 4660 4547 4628 4542 4805 5489 ]
C [ 4647 4436 4029 4671 4686 3879 3965 3840 3947 4511 4451 4315 3906 4080 4053 4602 3934 4219 5037 5109 6586 1215 2129 226 31 29 4898 1687 8 13413 58 3281 3578 3894 5162 4450 3726 4635 4371 3813 3703 3894 3768 3837 3574 4520 3919 4780 4082 3950 ]
G [ 3970 4137 4588 3995 4008 4213 4004 4235 4826 3833 3942 4088 3976 4517 4392 3876 4003 3976 4703 4876 3169 858 5387 3359 15906 4 11 3 18 8 89 4196 4723 6733 4084 3918 4824 4108 4095 4761 4890 5090 3917 3904 4894 4143 4051 3906 4562 4000 ]
T [ 4285 4478 4440 4322 4473 4475 5189 4924 4327 4831 4795 4689 4638 4565 4677 4063 5101 5248 4140 2912 4372 8616 1755 7635 239 17575 22 57 26 4196 389 3965 3524 2724 3540 4177 4609 4420 4538 4285 4440 4209 4271 4215 4492 4410 5022 4392 4171 4181 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.00 0.01 0.02 0.02 0.02 -0.03 0.07 0.06 0.08 -0.06 0.06 0.01 0.00 -0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.01 -0.00 -0.01 -0.02 0.03 0.05 0.04 -0.03 0.08 -0.02 0.02 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.02 0.03 0.01 0.06 -0.03 -0.06 -0.07 -0.02 -0.03 -0.01 0.01 0.02 0.03 0.02 ]
T [ -0.00 0.00 -0.00 0.01 0.03 -0.01 0.03 -0.00 0.08 -0.03 -0.02 -0.01 0.05 -0.01 0.00 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5878

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3269

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 514

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 340

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 22

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages