Detailed information of deep learning profile BP000655.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000655.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR735KEY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.00 0.04 0.00 0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.03 0.00 0.04 0.03 0.02 -0.00 0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 2364 2399 2300 2302 2381 2333 2377 2362 2337 2615 2308 2301 2303 2543 2354 2441 2649 2774 2453 1836 1914 2321 2579 234 3176 23 17 24 8860 83 3371 1013 4075 2098 1534 2346 2637 2330 2363 2530 2449 2356 2502 2384 2499 2364 2288 2473 2541 2537 ]
C [ 2147 2074 2029 2006 2108 2082 2013 2102 2160 1981 1947 1989 2210 2054 2374 2277 2244 2056 1856 2277 3049 2431 2141 59 3 4 9 10 1 7475 1563 2499 364 1407 2596 2490 2042 2075 1884 1852 1961 2093 2041 2109 1925 2001 2193 2110 2016 1973 ]
G [ 1987 1985 2000 2099 2028 2046 2076 1939 1955 1860 1980 1991 1926 2001 1935 1742 1764 1833 2272 2101 1761 1792 1512 39 5828 6 557 2693 142 10 65 1112 664 3486 2671 2142 2075 2125 2030 2172 2075 2076 1926 1983 1977 2174 2006 1921 2058 2026 ]
T [ 2511 2551 2680 2602 2492 2548 2543 2606 2557 2553 2774 2728 2570 2411 2346 2549 2352 2346 2428 2795 2285 2465 2777 8677 2 8976 8426 6282 6 1441 4010 4385 3906 2018 2208 2031 2255 2479 2732 2455 2524 2484 2540 2533 2608 2470 2522 2505 2394 2473 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 -0.01 -0.02 0.04 0.00 0.01 -0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.00 -0.02 -0.01 -0.03 -0.03 -0.02 0.04 0.01 0.01 -0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 -0.02 0.02 0.03 0.02 -0.03 -0.01 -0.00 0.00 0.01 0.01 ]
T [ 0.00 -0.00 -0.00 0.01 0.03 -0.03 0.04 0.04 0.04 -0.02 0.01 0.01 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2981

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 410

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 40

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 27

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages