Detailed information of deep learning profile BP000655.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000655.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR735KEY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 0.00 -0.00 0.02 0.03 0.04 0.00 0.03 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.03 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 0.00 0.00 0.04 0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2473 2394 2505 2522 2470 2608 2533 2540 2484 2524 2455 2732 2479 2255 2031 2208 2018 3906 4385 4010 1441 6 6282 8426 8976 2 8677 2777 2465 2285 2795 2428 2346 2352 2549 2346 2411 2570 2728 2774 2553 2557 2606 2543 2548 2492 2602 2680 2551 2511 ]
C [ 2026 2058 1921 2006 2174 1977 1983 1926 2076 2075 2172 2030 2125 2075 2142 2671 3486 664 1112 65 10 142 2693 557 6 5828 39 1512 1792 1761 2101 2272 1833 1764 1742 1935 2001 1926 1991 1980 1860 1955 1939 2076 2046 2028 2099 2000 1985 1987 ]
G [ 1973 2016 2110 2193 2001 1925 2109 2041 2093 1961 1852 1884 2075 2042 2490 2596 1407 364 2499 1563 7475 1 10 9 4 3 59 2141 2431 3049 2277 1856 2056 2244 2277 2374 2054 2210 1989 1947 1981 2160 2102 2013 2082 2108 2006 2029 2074 2147 ]
T [ 2537 2541 2473 2288 2364 2499 2384 2502 2356 2449 2530 2363 2330 2637 2346 1534 2098 4075 1013 3371 83 8860 24 17 23 3176 234 2579 2321 1914 1836 2453 2774 2649 2441 2354 2543 2303 2301 2308 2615 2337 2362 2377 2333 2381 2302 2300 2399 2364 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.01 0.01 0.01 -0.02 0.04 0.04 0.04 -0.03 0.03 0.01 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 0.00 -0.00 -0.01 -0.03 0.02 0.03 0.02 -0.02 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.01 0.01 0.01 0.04 -0.02 -0.03 -0.03 -0.01 -0.02 0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.01 -0.01 0.01 0.00 0.04 -0.02 -0.01 -0.00 0.03 -0.00 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2981

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 410

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 40

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 27

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages