Detailed information of deep learning profile BP000654.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000654.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR324RCI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 0.07 0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.05 0.00 0.08 0.05 0.04 -0.00 0.00 0.01 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 4495 4546 4438 4435 4562 4391 4510 4485 4540 4866 4474 4377 4382 4745 4614 4565 5109 5166 4545 3470 3237 3715 4492 268 6064 34 46 21 15523 199 6234 1866 7683 4112 2995 4357 5021 4478 4481 4809 4717 4616 4740 4565 4778 4614 4496 4698 4827 4787 ]
C [ 3813 3715 3662 3572 3715 3641 3528 3737 3813 3580 3454 3601 3899 3823 4139 4123 3789 3668 3312 3966 5905 5001 3797 74 16 13 19 16 1 13315 2596 4259 746 2404 4454 4430 3544 3740 3443 3383 3482 3620 3764 3771 3546 3670 3889 3721 3592 3540 ]
G [ 3615 3453 3620 3781 3630 3715 3755 3424 3450 3405 3605 3626 3638 3507 3391 3119 3224 3256 3970 3788 3286 3444 2597 49 10665 3 1074 4865 1206 17 116 1766 1080 6132 4879 3967 3620 3760 3626 3752 3713 3733 3456 3530 3490 3670 3516 3559 3564 3575 ]
T [ 4824 5033 5027 4959 4840 5000 4954 5101 4944 4896 5214 5143 4828 4672 4603 4940 4625 4657 4920 5523 4319 4587 5861 16356 2 16697 15608 11845 17 3216 7801 8856 7238 4099 4419 3993 4562 4769 5197 4803 4835 4778 4787 4881 4933 4793 4846 4769 4764 4845 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.01 -0.00 0.05 -0.01 -0.01 -0.04 0.08 -0.01 0.02 -0.01 0.03 0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.01 -0.04 -0.03 -0.05 -0.06 -0.05 0.05 0.00 0.02 -0.02 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.06 -0.04 0.02 0.04 0.01 -0.04 -0.02 -0.01 -0.00 0.02 0.02 0.01 0.01 ]
T [ 0.01 0.00 0.00 0.01 0.05 -0.05 0.08 0.06 0.06 -0.03 0.03 0.02 0.03 0.01 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1764

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 745

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 44

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages