Detailed information of deep learning profile BP000648.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000648.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BMO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.01 0.00 -0.00 0.06 0.07 0.10 0.00 0.07 0.00 0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.02 -0.00 0.01 0.00 0.09 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5382 5184 5222 5358 5196 5352 5157 5261 5094 5123 4997 5339 5350 5211 5378 5638 5072 4678 4269 5450 4198 7446 9129 7384 2310 28 13602 17144 18635 4 18039 6712 6100 4720 5515 5459 5153 4941 5367 5338 5065 5017 5792 5969 5114 5173 5214 5124 5409 5672 ]
C [ 4378 4301 4068 4338 4346 4068 4065 3959 3942 4244 4314 4082 4104 4264 4118 4449 3958 4268 5088 4930 6609 1336 2114 221 66 30 5032 1447 16 13447 83 3322 3801 3891 4951 4653 3798 4561 4257 3904 3965 3857 3925 4049 3877 4324 3924 4515 4183 4131 ]
G [ 4024 4257 4434 4218 4213 4313 4068 4394 4646 3975 4174 4089 4086 4136 4205 4067 4226 4171 4561 4885 3092 852 5430 2960 15980 3 24 20 24 42 118 4258 4901 6736 4284 4001 4664 4130 4155 4606 4622 4998 4216 3916 4608 4145 4200 4081 4400 4102 ]
T [ 4907 4949 4967 4777 4936 4958 5401 5077 5009 5349 5206 5181 5151 5080 4990 4537 5435 5574 4773 3426 4792 9057 2018 8126 335 18630 33 80 16 5198 451 4399 3889 3344 3941 4578 5076 5059 4912 4843 5039 4819 4758 4757 5092 5049 5353 4971 4699 4786 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 -0.00 0.02 0.03 0.02 0.02 -0.03 0.08 0.07 0.10 -0.08 0.07 0.02 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.03 -0.01 -0.01 -0.02 -0.04 0.04 0.05 0.03 -0.05 0.10 -0.03 0.02 0.02 0.02 0.02 ]
G [ 0.01 0.01 0.02 0.01 -0.02 0.03 0.00 0.08 -0.08 -0.07 -0.08 -0.03 -0.04 -0.01 0.01 0.02 0.03 0.02 ]
T [ -0.00 -0.00 -0.01 0.01 0.04 -0.01 0.03 -0.01 0.09 -0.04 -0.02 -0.02 0.06 -0.02 0.00 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6877

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5008

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 727

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 210

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 31

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages