Detailed information of deep learning profile BP000646.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in T47D using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000646.1
Cell line/tissue: T47D
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BKY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 0.01 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.05 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.08 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 0.05 0.00 0.08 0.06 0.06 -0.00 0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 5015 5220 5358 5387 5378 5221 5182 5318 5276 5280 4918 5117 5137 4858 4612 3726 3794 4638 624 75 29 135 20 14974 413 7833 1987 9254 4851 3532 5245 6350 5574 5054 5614 5529 5452 5396 5313 5655 5303 5338 5462 5440 5429 5203 5320 5396 5210 5357 ]
C [ 4458 4206 4314 4361 4516 4134 4121 4475 4614 4538 4900 4623 4682 3974 4212 5961 5637 4689 120 0 80 6 8 9 15847 2925 5829 895 3239 5317 4482 4231 4324 4083 3966 4135 4136 4194 4501 4144 4477 4640 4110 4187 4196 4425 4309 4293 4217 4264 ]
G [ 4196 4583 4218 4256 4046 4328 4292 4323 4220 4147 4178 4099 3847 4642 4785 4856 4511 3579 128 19569 13 1706 3557 4585 175 420 2271 1385 7155 5573 5170 4249 4141 4294 4308 4548 4349 4285 4251 4331 4312 4104 4115 4283 4348 4289 4361 4487 4361 4514 ]
T [ 5975 5635 5754 5640 5704 5961 6049 5528 5534 5679 5648 5805 5978 6170 6035 5101 5702 6738 18772 0 19522 17797 16059 76 3209 8466 9557 8110 4399 5222 4747 4814 5605 6213 5756 5432 5707 5769 5579 5514 5552 5562 5957 5734 5671 5727 5654 5468 5856 5509 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 0.00 -0.01 0.06 -0.02 -0.01 -0.04 0.07 -0.01 0.02 -0.01 0.03 0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.01 -0.04 -0.02 -0.08 -0.07 -0.05 0.07 0.00 0.03 -0.02 0.01 ]
G [ 0.01 0.02 0.01 0.01 -0.03 0.08 -0.04 0.03 0.04 0.03 -0.04 -0.01 -0.00 -0.00 0.02 ]
T [ 0.00 -0.00 0.00 0.01 0.05 -0.08 0.08 0.06 0.07 -0.04 0.02 0.01 0.02 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5994

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2006

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1775

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1701

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 979

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 448

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 61

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages