Detailed information of deep learning profile BP000646.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in T47D using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000646.1
Cell line/tissue: T47D
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BKY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 0.00 -0.00 0.06 0.06 0.08 0.00 0.05 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 0.08 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.01 0.01 0.00 ]
T [ 0.00 0.01 -0.00 0.01 -0.00 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5509 5856 5468 5654 5727 5671 5734 5957 5562 5552 5514 5579 5769 5707 5432 5756 6213 5605 4814 4747 5222 4399 8110 9557 8466 3209 76 16059 17797 19522 0 18772 6738 5702 5101 6035 6170 5978 5805 5648 5679 5534 5528 6049 5961 5704 5640 5754 5635 5975 ]
C [ 4514 4361 4487 4361 4289 4348 4283 4115 4104 4312 4331 4251 4285 4349 4548 4308 4294 4141 4249 5170 5573 7155 1385 2271 420 175 4585 3557 1706 13 19569 128 3579 4511 4856 4785 4642 3847 4099 4178 4147 4220 4323 4292 4328 4046 4256 4218 4583 4196 ]
G [ 4264 4217 4293 4309 4425 4196 4187 4110 4640 4477 4144 4501 4194 4136 4135 3966 4083 4324 4231 4482 5317 3239 895 5829 2925 15847 9 8 6 80 0 120 4689 5637 5961 4212 3974 4682 4623 4900 4538 4614 4475 4121 4134 4516 4361 4314 4206 4458 ]
T [ 5357 5210 5396 5320 5203 5429 5440 5462 5338 5303 5655 5313 5396 5452 5529 5614 5054 5574 6350 5245 3532 4851 9254 1987 7833 413 14974 20 135 29 75 624 4638 3794 3726 4612 4858 5137 5117 4918 5280 5276 5318 5182 5221 5378 5387 5358 5220 5015 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.02 0.01 0.02 -0.04 0.07 0.06 0.08 -0.08 0.05 0.01 0.00 -0.00 0.00 ]
C [ 0.02 -0.00 -0.00 -0.01 -0.04 0.03 0.04 0.03 -0.04 0.08 -0.03 0.01 0.01 0.02 0.01 ]
G [ 0.01 -0.02 0.03 0.00 0.07 -0.05 -0.07 -0.08 -0.02 -0.04 -0.01 0.01 0.02 0.02 0.01 ]
T [ 0.00 0.03 -0.01 0.02 -0.01 0.07 -0.04 -0.01 -0.02 0.06 -0.01 0.00 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5994

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2006

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1775

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1701

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 979

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 448

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 61

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages