Detailed information of deep learning profile BP000643.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000643.1
Cell line/tissue: WTC11
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR248QBT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.09 -0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.13 -0.00 0.10 0.00 0.00 0.00 0.00 0.02 0.01 0.00 ]
G [ 0.00 0.01 0.03 0.00 0.00 0.00 0.00 0.06 -0.00 0.13 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.03 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2038 1720 1539 1662 2286 1987 1601 1602 1632 1538 1502 1963 2218 2125 2154 1660 1632 1982 2450 2241 315 4 9081 2 3152 139 0 2837 672 1113 2332 1850 2094 1548 1608 1620 2060 2115 1860 1558 1863 2394 2483 2196 1975 2000 1982 1999 1845 1710 ]
C [ 2534 2827 2884 2934 2620 2471 2285 2262 2272 2982 3200 2968 2543 2435 2725 2923 2838 2207 1591 965 1419 9138 18 8622 628 195 3 1829 4877 4337 2865 3006 2501 3025 3357 2641 2396 2509 2933 3110 2936 2756 2394 2447 2713 2503 2479 2510 2459 2592 ]
G [ 2463 2507 2542 2711 2463 2296 2535 3202 3747 2955 2384 2428 2919 3104 2665 2643 2680 2992 4005 5665 959 10 48 379 5357 89 9144 3540 1613 1925 2377 2466 2871 2789 2294 2677 2901 2933 2719 2559 2659 2459 2601 2596 2825 3062 2977 2762 3086 2947 ]
T [ 2117 2098 2187 1845 1783 2398 2731 2086 1501 1677 2066 1793 1472 1488 1608 1926 2002 1971 1106 281 6459 0 5 149 15 8729 5 946 1990 1777 1578 1830 1686 1790 1893 2214 1795 1595 1640 1925 1694 1543 1674 1913 1639 1587 1714 1881 1762 1903 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 -0.00 0.02 -0.02 -0.02 0.09 -0.09 0.01 -0.03 -0.07 0.04 -0.03 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.00 0.02 0.13 -0.04 0.10 -0.02 0.01 -0.06 0.01 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 0.00 -0.05 0.01 -0.02 0.10 -0.04 0.13 0.01 0.01 0.02 0.02 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.04 0.04 -0.07 -0.04 0.01 -0.09 0.08 -0.02 -0.02 0.02 -0.01 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 598

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 301

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages