Detailed information of deep learning profile BP000633.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000633.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BHX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.14 -0.00 0.10 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.07 -0.00 0.13 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1796 1571 1424 1509 2045 1867 1422 1417 1531 1465 1393 1721 2060 1811 1989 1520 1437 1774 2437 1377 291 5 7662 3 2625 114 5 2239 649 1033 2128 1409 1753 1403 1404 1451 1896 1943 1688 1480 1642 2021 2232 1892 1696 1771 1702 1793 1715 1597 ]
C [ 1984 2264 2246 2293 2086 1837 1753 1746 1727 2315 2595 2410 1942 1990 2128 2431 2170 1595 1031 397 906 7667 4 6880 353 167 17 1434 3205 3522 2081 2513 2103 2477 2642 2058 1858 1874 2248 2442 2385 2202 1895 1921 2173 1993 2033 1927 1909 2054 ]
G [ 1977 1924 2018 2168 2033 1829 2002 2652 3020 2380 1913 1926 2335 2506 2099 2059 2002 2636 3278 5825 578 11 13 303 4696 102 7648 3174 1624 1752 2008 2103 2304 2194 1820 2145 2380 2367 2244 2026 2037 1965 2032 2049 2263 2436 2352 2263 2449 2384 ]
T [ 1926 1924 1995 1713 1519 2150 2506 1868 1405 1523 1782 1626 1346 1376 1467 1673 2074 1678 937 84 5908 0 4 497 9 7300 13 836 2205 1376 1466 1658 1523 1609 1817 2029 1549 1499 1503 1735 1619 1495 1524 1821 1551 1483 1596 1700 1610 1648 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.00 0.03 -0.02 -0.03 0.11 -0.09 0.02 -0.02 -0.06 0.04 -0.03 -0.01 -0.00 0.00 -0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.01 0.01 0.14 -0.04 0.11 -0.03 0.01 -0.05 0.01 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.06 -0.00 -0.05 0.01 -0.02 0.11 -0.04 0.13 0.01 0.00 0.02 0.02 0.01 0.01 ]
T [ -0.00 0.00 0.00 -0.01 -0.04 0.06 -0.06 -0.04 0.02 -0.08 0.09 -0.03 -0.01 0.02 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3068

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1181

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 530

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 25

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages