Detailed information of deep learning profile BP000631.1

  1. Home
  2. Deep Learning Profile > BP000631.1
This page shows detailed deep learning-derived predictions and motifs for USF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000631.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BGI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.14 -0.00 0.09 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 0.00 0.11 -0.00 0.14 0.00 -0.00 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1551 1784 1534 1549 1664 1750 1533 1476 1558 2001 1806 1634 1555 1774 1458 1447 1898 966 15 7945 9 392 4 2 6081 148 1104 1596 1979 1772 1480 1398 1403 1628 1758 1446 1388 1884 2438 2094 1542 1682 1998 1799 1891 1655 1611 1653 1801 1701 ]
C [ 2660 2428 2438 2366 2433 2400 2590 2764 2786 2581 2280 2605 2657 2326 2254 2060 2097 3969 8402 130 5988 335 10 16 816 5828 3629 2840 2349 2408 2360 2879 2661 2239 2349 2888 3374 2957 2359 2241 2335 2583 2315 2363 2373 2375 2390 2525 2391 2421 ]
G [ 2518 2355 2326 2561 2679 2844 2592 2243 2186 2381 2829 2752 2452 2814 2538 3921 3635 1627 14 198 400 7702 12 8412 1170 802 1386 1996 2649 2779 2667 2329 2390 2841 2932 2645 2097 2082 2156 2229 2425 2601 2629 2586 2356 2648 2523 2496 2476 2613 ]
T [ 1704 1866 2135 1957 1657 1439 1718 1950 1903 1470 1518 1442 1769 1519 2183 1005 803 1871 2 160 2036 4 8407 3 366 1655 2314 2001 1456 1474 1926 1827 1979 1725 1394 1454 1574 1510 1480 1869 2131 1567 1491 1685 1813 1755 1909 1759 1765 1698 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 0.02 -0.02 -0.04 0.10 -0.11 0.02 -0.04 -0.07 0.05 -0.04 -0.01 0.00 -0.00 0.00 ]
C [ 0.01 0.02 0.02 0.03 0.01 0.02 0.14 -0.04 0.12 -0.02 0.00 -0.05 0.01 0.06 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.05 0.01 -0.06 0.01 -0.03 0.12 -0.04 0.14 0.02 -0.01 0.03 0.01 0.02 0.01 ]
T [ 0.00 -0.00 -0.00 -0.01 -0.03 0.04 -0.07 -0.03 0.03 -0.11 0.11 -0.04 -0.03 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 162

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 29

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages