Detailed information of deep learning profile BP000634.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000634.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BIU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.11 0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.18 -0.00 0.13 0.00 -0.00 0.00 -0.00 0.04 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.05 -0.00 0.00 0.00 0.00 0.03 -0.00 0.18 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 -0.00 0.00 -0.00 0.10 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5232 5713 6944 6277 5218 5282 5449 5122 5114 6103 6560 6842 6742 5494 5522 7016 7196 6270 937 5 24526 8 13715 488 2 11207 1351 3848 7116 6110 6682 5202 5088 5329 6464 6723 6237 5351 5924 7271 7735 6424 6162 6372 6342 6257 6074 5778 6080 6055 ]
C [ 6630 6647 6214 5779 5611 5480 5400 6702 7543 6840 6395 5793 6538 6861 6648 4662 3370 1770 3975 24744 111 23477 4065 256 2 3373 13096 10682 6990 6989 6133 7203 7915 6490 5691 5661 6677 7365 7130 6559 5578 5801 6429 5931 5751 5813 5911 6108 6360 5929 ]
G [ 6062 6545 6113 5958 6071 7721 8879 7454 5799 6102 6835 7286 6385 6680 6515 7115 10382 15993 2266 4 54 1035 6949 262 24727 7753 3598 4771 5169 6193 6526 6572 5728 6235 7110 7388 6595 6185 6205 5796 6186 6708 6889 7289 7299 7004 7278 6937 6770 6968 ]
T [ 6834 5853 5487 6744 7858 6275 5030 5480 6302 5713 4968 4837 5093 5723 6073 5965 3810 725 17580 5 67 238 29 23752 27 2425 6713 5457 5483 5466 5417 5781 6027 6704 5493 4986 5249 5857 5499 5132 5259 5825 5278 5166 5366 5684 5495 5935 5548 5806 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.04 -0.03 -0.03 0.11 -0.11 0.03 -0.04 -0.07 0.05 -0.04 -0.01 -0.00 -0.00 0.00 ]
C [ 0.02 0.02 0.02 0.02 -0.00 0.03 0.18 -0.02 0.13 0.01 0.00 -0.07 0.01 0.07 0.04 0.03 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.04 0.08 0.00 -0.06 -0.00 0.02 0.14 -0.03 0.18 0.03 0.01 0.03 0.02 0.02 0.02 ]
T [ 0.00 -0.00 0.00 -0.01 -0.05 0.06 -0.07 -0.05 0.03 -0.12 0.11 -0.02 -0.02 0.03 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 417

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 75

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages