Detailed information of deep learning profile BP000635.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000635.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BJB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 0.00 0.01 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.15 0.00 0.10 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.05 -0.00 0.00 0.00 0.00 0.08 -0.00 0.15 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.00 -0.00 0.00 -0.00 0.09 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2590 2228 2082 2214 2972 2637 2047 2049 2188 2082 1980 2540 2862 2710 2774 2148 2004 2571 3300 2258 325 17 11012 20 3539 247 15 2896 849 1496 3192 2078 2468 2108 2077 2104 2729 2789 2412 2194 2332 2950 3164 2757 2449 2612 2492 2556 2422 2340 ]
C [ 2970 3355 3278 3387 3052 2753 2679 2579 2646 3406 3807 3490 2981 2903 3198 3691 3179 2415 1864 1168 1743 11078 59 9630 561 407 72 2322 5370 5163 3093 3583 3110 3568 3803 3015 2776 2840 3307 3692 3472 3253 2875 2882 3190 2949 2998 2945 2817 2961 ]
G [ 2822 2794 2871 3132 2925 2655 2878 3802 4265 3454 2757 2778 3276 3503 3049 2867 2932 3787 4593 7367 672 54 63 520 7041 257 11047 4561 1942 2294 2721 2936 3202 3046 2773 3068 3383 3417 3215 2763 3047 2818 2926 2926 3235 3387 3362 3211 3529 3409 ]
T [ 2797 2802 2948 2446 2230 3134 3575 2749 2080 2237 2635 2371 2060 2063 2158 2473 3064 2406 1422 386 8439 30 45 1009 38 10268 45 1400 3018 2226 2173 2582 2399 2457 2526 2992 2291 2133 2245 2530 2328 2158 2214 2614 2305 2231 2327 2467 2411 2469 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.03 -0.03 -0.03 0.11 -0.10 0.03 -0.03 -0.07 0.05 -0.03 -0.01 -0.00 -0.00 0.00 ]
C [ 0.02 0.02 0.02 0.03 -0.00 0.02 0.15 -0.03 0.12 -0.02 0.01 -0.05 0.01 0.05 0.03 0.02 0.02 0.01 ]
G [ 0.01 0.02 0.02 0.03 0.07 0.00 -0.05 0.00 -0.01 0.12 -0.03 0.15 0.02 0.01 0.03 0.02 0.02 0.02 ]
T [ 0.00 0.00 0.00 -0.01 -0.04 0.06 -0.07 -0.04 0.03 -0.10 0.10 -0.03 -0.02 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 554

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 366

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages